miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10334 3' -51.8 NC_002687.1 + 14762 0.66 0.999597
Target:  5'- aGGGGcgauCGACCGUGAGcGcACUgucUGCGg -3'
miRNA:   3'- aCUCCu---GCUGGCACUU-CuUGAa--GCGC- -5'
10334 3' -51.8 NC_002687.1 + 15886 0.66 0.999597
Target:  5'- aGGGGcgauCGACCGUGAGcGcACUgucUGCGg -3'
miRNA:   3'- aCUCCu---GCUGGCACUU-CuUGAa--GCGC- -5'
10334 3' -51.8 NC_002687.1 + 16478 0.66 0.999597
Target:  5'- aGGGGcgauCGACCGUGAGcGcACUgucUGCGg -3'
miRNA:   3'- aCUCCu---GCUGGCACUU-CuUGAa--GCGC- -5'
10334 3' -51.8 NC_002687.1 + 120852 0.66 0.999597
Target:  5'- aGAGGACGGCacgaaCGUGuuugucagcgucAAGAACUUCa-- -3'
miRNA:   3'- aCUCCUGCUG-----GCAC------------UUCUUGAAGcgc -5'
10334 3' -51.8 NC_002687.1 + 217432 0.66 0.999504
Target:  5'- -uGGGAgGACuCGUgGGAGGAC-UCGUGg -3'
miRNA:   3'- acUCCUgCUG-GCA-CUUCUUGaAGCGC- -5'
10334 3' -51.8 NC_002687.1 + 156104 0.66 0.999504
Target:  5'- cGAGGACGGgacguCCGUGAAGcccacgauauGCUUCa-- -3'
miRNA:   3'- aCUCCUGCU-----GGCACUUCu---------UGAAGcgc -5'
10334 3' -51.8 NC_002687.1 + 102037 0.66 0.999504
Target:  5'- --cGGACGACCaggGucuGAAgUUCGCGa -3'
miRNA:   3'- acuCCUGCUGGca-Cuu-CUUgAAGCGC- -5'
10334 3' -51.8 NC_002687.1 + 6478 0.66 0.999392
Target:  5'- gGAGGugG-CCGaacGAGAcuACUUCGCc -3'
miRNA:   3'- aCUCCugCuGGCac-UUCU--UGAAGCGc -5'
10334 3' -51.8 NC_002687.1 + 243824 0.66 0.99926
Target:  5'- -aAGGAUG-CCGUGAAGcGugUUCuGCGu -3'
miRNA:   3'- acUCCUGCuGGCACUUC-UugAAG-CGC- -5'
10334 3' -51.8 NC_002687.1 + 147885 0.66 0.99926
Target:  5'- gGAGGuguuuaacAUGACCaaaGAAGAACUUCaGCGc -3'
miRNA:   3'- aCUCC--------UGCUGGca-CUUCUUGAAG-CGC- -5'
10334 3' -51.8 NC_002687.1 + 118205 0.66 0.99926
Target:  5'- cGAGGACGACgGUGcAGcGCc-UGCGu -3'
miRNA:   3'- aCUCCUGCUGgCACuUCuUGaaGCGC- -5'
10334 3' -51.8 NC_002687.1 + 118235 0.66 0.99926
Target:  5'- cGAGGACGACgGUGcAGcGCc-UGCGu -3'
miRNA:   3'- aCUCCUGCUGgCACuUCuUGaaGCGC- -5'
10334 3' -51.8 NC_002687.1 + 20026 0.66 0.998919
Target:  5'- -aGGGACGAguUCGUGAAgcacGAGCUggGCGa -3'
miRNA:   3'- acUCCUGCU--GGCACUU----CUUGAagCGC- -5'
10334 3' -51.8 NC_002687.1 + 221452 0.66 0.998919
Target:  5'- -aGGGACGAguUCGUGAAgcacGAGCUggGCGa -3'
miRNA:   3'- acUCCUGCU--GGCACUU----CUUGAagCGC- -5'
10334 3' -51.8 NC_002687.1 + 61640 0.67 0.998704
Target:  5'- uUGAGaGACG-CCuUGAAGAGCUccUCuGCGu -3'
miRNA:   3'- -ACUC-CUGCuGGcACUUCUUGA--AG-CGC- -5'
10334 3' -51.8 NC_002687.1 + 13184 0.67 0.998558
Target:  5'- aGAGGgcgugugccacuggaGCGACacaGUGAGGAACgugUGCa -3'
miRNA:   3'- aCUCC---------------UGCUGg--CACUUCUUGaa-GCGc -5'
10334 3' -51.8 NC_002687.1 + 102234 0.67 0.998453
Target:  5'- aGAGGACGACgGUGcuuGGggUggaagcCGUGa -3'
miRNA:   3'- aCUCCUGCUGgCACu--UCuuGaa----GCGC- -5'
10334 3' -51.8 NC_002687.1 + 78243 0.67 0.998453
Target:  5'- cGAGGugGAggggaauaCCGUcGAcguGAGCUUCGUu -3'
miRNA:   3'- aCUCCugCU--------GGCA-CUu--CUUGAAGCGc -5'
10334 3' -51.8 NC_002687.1 + 195009 0.67 0.998163
Target:  5'- aUGAGGuuUGACCGUuucAGAGCUaCGCa -3'
miRNA:   3'- -ACUCCu-GCUGGCAcu-UCUUGAaGCGc -5'
10334 3' -51.8 NC_002687.1 + 224987 0.67 0.998163
Target:  5'- uUGGGGacaGCGGCgGUGGagcuGGAGCUggaGCGg -3'
miRNA:   3'- -ACUCC---UGCUGgCACU----UCUUGAag-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.