miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10334 5' -52.2 NC_002687.1 + 85669 0.66 0.999217
Target:  5'- --gACGGGACCGACgggaCCCACGGg--- -3'
miRNA:   3'- ccgUGCCUUGGUUGg---GGGUGUUaacg -5'
10334 5' -52.2 NC_002687.1 + 269895 0.66 0.999217
Target:  5'- uGGCAUGGAACauuACCUgUCGCcaAAUUGUg -3'
miRNA:   3'- -CCGUGCCUUGgu-UGGG-GGUG--UUAACG- -5'
10334 5' -52.2 NC_002687.1 + 78534 0.66 0.999217
Target:  5'- cGGCAUGGGACUggugucgaAGCCaUCGCAAcaGCa -3'
miRNA:   3'- -CCGUGCCUUGG--------UUGGgGGUGUUaaCG- -5'
10334 5' -52.2 NC_002687.1 + 168398 0.66 0.999217
Target:  5'- aGGCugacacaGGAGCCGACCgggggcaccguCCCGgGAUcguuUGCg -3'
miRNA:   3'- -CCGug-----CCUUGGUUGG-----------GGGUgUUA----ACG- -5'
10334 5' -52.2 NC_002687.1 + 202593 0.66 0.999217
Target:  5'- -aCACGGAaacACCGACCCCguguuUACAuUUGa -3'
miRNA:   3'- ccGUGCCU---UGGUUGGGG-----GUGUuAACg -5'
10334 5' -52.2 NC_002687.1 + 27925 0.66 0.999202
Target:  5'- aGGCACGacucuGACCAgggcggaACCCCCuuguuACAAUcgGCc -3'
miRNA:   3'- -CCGUGCc----UUGGU-------UGGGGG-----UGUUAa-CG- -5'
10334 5' -52.2 NC_002687.1 + 4451 0.66 0.999053
Target:  5'- gGGCACagGGAGCCGACguaccaaauauaCUCUAUAAU-GCg -3'
miRNA:   3'- -CCGUG--CCUUGGUUG------------GGGGUGUUAaCG- -5'
10334 5' -52.2 NC_002687.1 + 134249 0.66 0.999053
Target:  5'- --aACGaGGACCuuCCUCCGCGAgcgGCu -3'
miRNA:   3'- ccgUGC-CUUGGuuGGGGGUGUUaa-CG- -5'
10334 5' -52.2 NC_002687.1 + 310614 0.66 0.999053
Target:  5'- uGCACGGuuUCAcGCCCCCuguaAGcUGCa -3'
miRNA:   3'- cCGUGCCuuGGU-UGGGGGug--UUaACG- -5'
10334 5' -52.2 NC_002687.1 + 308602 0.66 0.999053
Target:  5'- aGGgGCGGAGCCcGCCCaggggACGAggaggUGUg -3'
miRNA:   3'- -CCgUGCCUUGGuUGGGgg---UGUUa----ACG- -5'
10334 5' -52.2 NC_002687.1 + 34533 0.66 0.999053
Target:  5'- cGCACGGGACaUAAgCCUCGCugucaGCg -3'
miRNA:   3'- cCGUGCCUUG-GUUgGGGGUGuuaa-CG- -5'
10334 5' -52.2 NC_002687.1 + 112641 0.66 0.999053
Target:  5'- uGCAaGGAACCGACCgacgauacaCCACGcucUUGCu -3'
miRNA:   3'- cCGUgCCUUGGUUGGg--------GGUGUu--AACG- -5'
10334 5' -52.2 NC_002687.1 + 18699 0.66 0.998941
Target:  5'- cGGcCACGGcgUCAcugucaucaccgcccGCCCCCgaaGCAGggGCa -3'
miRNA:   3'- -CC-GUGCCuuGGU---------------UGGGGG---UGUUaaCG- -5'
10334 5' -52.2 NC_002687.1 + 214495 0.66 0.99886
Target:  5'- --gACGGAAUacuGCCCCCAU---UGCu -3'
miRNA:   3'- ccgUGCCUUGgu-UGGGGGUGuuaACG- -5'
10334 5' -52.2 NC_002687.1 + 61067 0.66 0.99886
Target:  5'- gGGCACGacgcguCCggUCUCCACGuccgUGCu -3'
miRNA:   3'- -CCGUGCcuu---GGuuGGGGGUGUua--ACG- -5'
10334 5' -52.2 NC_002687.1 + 237424 0.66 0.99886
Target:  5'- aGGCGgacguCGGcGACCAGCCCUacaagaucguCAUGAUUGUu -3'
miRNA:   3'- -CCGU-----GCC-UUGGUUGGGG----------GUGUUAACG- -5'
10334 5' -52.2 NC_002687.1 + 293316 0.66 0.99886
Target:  5'- cGGaa-GGGGCUGucGCCuCCCGCuGUUGCa -3'
miRNA:   3'- -CCgugCCUUGGU--UGG-GGGUGuUAACG- -5'
10334 5' -52.2 NC_002687.1 + 199075 0.66 0.99886
Target:  5'- cGGUuuuCGGGAUgCAAuCCCCCGCGaaaGUUGg -3'
miRNA:   3'- -CCGu--GCCUUG-GUU-GGGGGUGU---UAACg -5'
10334 5' -52.2 NC_002687.1 + 100376 0.66 0.99886
Target:  5'- cGGCACaGGuAUCGAUCUCCACAc---- -3'
miRNA:   3'- -CCGUG-CCuUGGUUGGGGGUGUuaacg -5'
10334 5' -52.2 NC_002687.1 + 18863 0.66 0.99886
Target:  5'- gGGCGCGGuGGCCuccuucuGCUgCUACAGgaGCa -3'
miRNA:   3'- -CCGUGCC-UUGGu------UGGgGGUGUUaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.