miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10334 5' -52.2 NC_002687.1 + 202217 0.66 0.998839
Target:  5'- cGCGCGuGAGCCAcugugccaagccGCCgcuggaguccgcgCCCGCA-UUGCg -3'
miRNA:   3'- cCGUGC-CUUGGU------------UGG-------------GGGUGUuAACG- -5'
10334 5' -52.2 NC_002687.1 + 169256 0.66 0.998634
Target:  5'- cGGCACaGGuauCCGGCCCCgGCu----- -3'
miRNA:   3'- -CCGUG-CCuu-GGUUGGGGgUGuuaacg -5'
10334 5' -52.2 NC_002687.1 + 258089 0.66 0.998634
Target:  5'- -uCGCGGAGCUgugaGACCagaaugaCCACGAaUGCg -3'
miRNA:   3'- ccGUGCCUUGG----UUGGg------GGUGUUaACG- -5'
10334 5' -52.2 NC_002687.1 + 96119 0.66 0.998634
Target:  5'- cGGCgacaugGCGGuuCgCGGCCCCCguGCGGUUGg -3'
miRNA:   3'- -CCG------UGCCuuG-GUUGGGGG--UGUUAACg -5'
10334 5' -52.2 NC_002687.1 + 232889 0.66 0.998634
Target:  5'- aGCACuuGGuucauCCAGCCCCCuugg-UGCa -3'
miRNA:   3'- cCGUG--CCuu---GGUUGGGGGuguuaACG- -5'
10334 5' -52.2 NC_002687.1 + 20903 0.66 0.99861
Target:  5'- gGGCAguUGGGGCCAAUcugaaaaCCCCGCuggUGg -3'
miRNA:   3'- -CCGU--GCCUUGGUUG-------GGGGUGuuaACg -5'
10334 5' -52.2 NC_002687.1 + 264545 0.66 0.998372
Target:  5'- gGGUGCGGcGgCGugCUCCGCAAUUa- -3'
miRNA:   3'- -CCGUGCCuUgGUugGGGGUGUUAAcg -5'
10334 5' -52.2 NC_002687.1 + 28717 0.66 0.998372
Target:  5'- uGUAUGcGACaagAAUCCCCGCAAUUGUc -3'
miRNA:   3'- cCGUGCcUUGg--UUGGGGGUGUUAACG- -5'
10334 5' -52.2 NC_002687.1 + 101232 0.66 0.998372
Target:  5'- uGGCGCGGucuUCGGCgCUCACGGUgGUc -3'
miRNA:   3'- -CCGUGCCuu-GGUUGgGGGUGUUAaCG- -5'
10334 5' -52.2 NC_002687.1 + 217516 0.66 0.998372
Target:  5'- -aCACGGGGCgAACauCCCCACAGccuUUGg -3'
miRNA:   3'- ccGUGCCUUGgUUG--GGGGUGUU---AACg -5'
10334 5' -52.2 NC_002687.1 + 215701 0.66 0.998372
Target:  5'- -aUACGGGggcGCCAuaaGCCCCCACGu---- -3'
miRNA:   3'- ccGUGCCU---UGGU---UGGGGGUGUuaacg -5'
10334 5' -52.2 NC_002687.1 + 314530 0.66 0.998372
Target:  5'- uGGCgACGGccCCAcCCCCUACcag-GCg -3'
miRNA:   3'- -CCG-UGCCuuGGUuGGGGGUGuuaaCG- -5'
10334 5' -52.2 NC_002687.1 + 24697 0.66 0.998285
Target:  5'- uGCACGGGAUCGACgaaggaCCCGCcGUcggaaggguuaagaUGCg -3'
miRNA:   3'- cCGUGCCUUGGUUGg-----GGGUGuUA--------------ACG- -5'
10334 5' -52.2 NC_002687.1 + 296067 0.67 0.998068
Target:  5'- uGCACGGcAUCAGCCCCgCuGCuccgcUGCa -3'
miRNA:   3'- cCGUGCCuUGGUUGGGG-G-UGuua--ACG- -5'
10334 5' -52.2 NC_002687.1 + 123692 0.67 0.998068
Target:  5'- aGgGCGGAA--GACCCCCGCAug-GUc -3'
miRNA:   3'- cCgUGCCUUggUUGGGGGUGUuaaCG- -5'
10334 5' -52.2 NC_002687.1 + 70489 0.67 0.998068
Target:  5'- uGUACGGcgaCGACCUCCGCAAaaagagaUGCa -3'
miRNA:   3'- cCGUGCCuugGUUGGGGGUGUUa------ACG- -5'
10334 5' -52.2 NC_002687.1 + 139489 0.67 0.998068
Target:  5'- cGCugGGAuACC-AUCCCCAacuaUGCa -3'
miRNA:   3'- cCGugCCU-UGGuUGGGGGUguuaACG- -5'
10334 5' -52.2 NC_002687.1 + 284663 0.67 0.997718
Target:  5'- uGCuuGCGGAGCU--CCgCCACAcuuGUUGCa -3'
miRNA:   3'- cCG--UGCCUUGGuuGGgGGUGU---UAACG- -5'
10334 5' -52.2 NC_002687.1 + 330048 0.67 0.997718
Target:  5'- aGGaCAUGGGGCCAAUCagagauuaCCAC--UUGCu -3'
miRNA:   3'- -CC-GUGCCUUGGUUGGg-------GGUGuuAACG- -5'
10334 5' -52.2 NC_002687.1 + 157687 0.67 0.997718
Target:  5'- cGC-CGuGGACUgcuuccguGGCCUCCugGAUUGCa -3'
miRNA:   3'- cCGuGC-CUUGG--------UUGGGGGugUUAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.