miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10335 5' -56.1 NC_002687.1 + 4775 0.66 0.982627
Target:  5'- uGCACCggaGCgucGAUgGGAGGGCa- -3'
miRNA:   3'- gCGUGGag-CGaaaCUGgCCUCCUGag -5'
10335 5' -56.1 NC_002687.1 + 248377 0.66 0.982627
Target:  5'- uGCACaccccgacuaCUCGCUgcUGGCCGgGAGGAUc- -3'
miRNA:   3'- gCGUG----------GAGCGAa-ACUGGC-CUCCUGag -5'
10335 5' -56.1 NC_002687.1 + 182678 0.67 0.962406
Target:  5'- uGCGa-UCGCUUccgugGAUUGGAGGACUUc -3'
miRNA:   3'- gCGUggAGCGAAa----CUGGCCUCCUGAG- -5'
10335 5' -56.1 NC_002687.1 + 9978 0.68 0.951732
Target:  5'- cCGCACCgUCGCUgcuaaACCGGguacgAGGACa- -3'
miRNA:   3'- -GCGUGG-AGCGAaac--UGGCC-----UCCUGag -5'
10335 5' -56.1 NC_002687.1 + 112961 0.68 0.951732
Target:  5'- uGCACCagacCGCUcuucUUGACCGGaAGGuuUCc -3'
miRNA:   3'- gCGUGGa---GCGA----AACUGGCC-UCCugAG- -5'
10335 5' -56.1 NC_002687.1 + 275322 0.68 0.951732
Target:  5'- uGUAUCUCGC---GGCCGaGAGGGgUCa -3'
miRNA:   3'- gCGUGGAGCGaaaCUGGC-CUCCUgAG- -5'
10335 5' -56.1 NC_002687.1 + 87219 0.68 0.951732
Target:  5'- uGUugCUCGCUg-GugCGGGGGAggCg -3'
miRNA:   3'- gCGugGAGCGAaaCugGCCUCCUgaG- -5'
10335 5' -56.1 NC_002687.1 + 329778 0.68 0.946945
Target:  5'- uGCGCCgaggCGUgcccgguggcgUGGCCGGAGGAg-- -3'
miRNA:   3'- gCGUGGa---GCGaa---------ACUGGCCUCCUgag -5'
10335 5' -56.1 NC_002687.1 + 96552 0.68 0.943586
Target:  5'- gGCaucgGCCUCGUUcUUGACCGGuAGGAa-- -3'
miRNA:   3'- gCG----UGGAGCGA-AACUGGCC-UCCUgag -5'
10335 5' -56.1 NC_002687.1 + 194144 0.68 0.934592
Target:  5'- uGCGCC-CGCUcguUUGGCCccgGGGGGAUa- -3'
miRNA:   3'- gCGUGGaGCGA---AACUGG---CCUCCUGag -5'
10335 5' -56.1 NC_002687.1 + 217440 0.69 0.924739
Target:  5'- aGCA-CUCGUgggagGACUcgugGGAGGACUCg -3'
miRNA:   3'- gCGUgGAGCGaaa--CUGG----CCUCCUGAG- -5'
10335 5' -56.1 NC_002687.1 + 106839 0.69 0.902455
Target:  5'- aGCaaACCUCGCUgggaGACUGGuuGGugUCu -3'
miRNA:   3'- gCG--UGGAGCGAaa--CUGGCCu-CCugAG- -5'
10335 5' -56.1 NC_002687.1 + 205192 0.7 0.896354
Target:  5'- gGCACCUCGac--GGCUGGAGGGauugUCg -3'
miRNA:   3'- gCGUGGAGCgaaaCUGGCCUCCUg---AG- -5'
10335 5' -56.1 NC_002687.1 + 308732 0.7 0.887465
Target:  5'- aCGCACCUCGCU---ACCGGucgucgugcgacGACUCu -3'
miRNA:   3'- -GCGUGGAGCGAaacUGGCCuc----------CUGAG- -5'
10335 5' -56.1 NC_002687.1 + 86250 0.72 0.816447
Target:  5'- aCGCACUcaauaccacgaUUGCUUUGGgCGGAGGgacGCUCc -3'
miRNA:   3'- -GCGUGG-----------AGCGAAACUgGCCUCC---UGAG- -5'
10335 5' -56.1 NC_002687.1 + 209847 0.72 0.782442
Target:  5'- aCGCGCCUgGCgc-GAgUGGAGGuACUCu -3'
miRNA:   3'- -GCGUGGAgCGaaaCUgGCCUCC-UGAG- -5'
10335 5' -56.1 NC_002687.1 + 296944 0.73 0.76468
Target:  5'- uGCACCggggggugagcUUGCUcgacUUGACCGGAGGAgaCa -3'
miRNA:   3'- gCGUGG-----------AGCGA----AACUGGCCUCCUgaG- -5'
10335 5' -56.1 NC_002687.1 + 6036 0.74 0.68041
Target:  5'- aGCGCCUCGCUc-GACUGGucgAGGACg- -3'
miRNA:   3'- gCGUGGAGCGAaaCUGGCC---UCCUGag -5'
10335 5' -56.1 NC_002687.1 + 119614 1.09 0.006254
Target:  5'- gCGCACCUCGCUUUGACCGGAGGACUCu -3'
miRNA:   3'- -GCGUGGAGCGAAACUGGCCUCCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.