miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10336 5' -56.8 NC_002687.1 + 167940 0.66 0.979157
Target:  5'- aGUCGuCGACgCUCcaC-CCCGCUGGAg -3'
miRNA:   3'- -CAGCuGCUG-GAGaaGaGGGUGGCCUg -5'
10336 5' -56.8 NC_002687.1 + 328443 0.66 0.979157
Target:  5'- --aGACGACCUCgaagCCCACCaaGCa -3'
miRNA:   3'- cagCUGCUGGAGaagaGGGUGGccUG- -5'
10336 5' -56.8 NC_002687.1 + 159205 0.66 0.974612
Target:  5'- uGUCGACGGCCgccg--CCU-CCGGGCu -3'
miRNA:   3'- -CAGCUGCUGGagaagaGGGuGGCCUG- -5'
10336 5' -56.8 NC_002687.1 + 215346 0.66 0.974612
Target:  5'- uGUCGcCGcCCUCggC-CCCGCCGGuguCg -3'
miRNA:   3'- -CAGCuGCuGGAGaaGaGGGUGGCCu--G- -5'
10336 5' -56.8 NC_002687.1 + 299634 0.66 0.974612
Target:  5'- uGUCGAC--CCUCgUCgCCCGCCgcuGGACg -3'
miRNA:   3'- -CAGCUGcuGGAGaAGaGGGUGG---CCUG- -5'
10336 5' -56.8 NC_002687.1 + 170758 0.66 0.972087
Target:  5'- -aCGAUGACCUCgcgUCgCgCGCCGGu- -3'
miRNA:   3'- caGCUGCUGGAGa--AGaGgGUGGCCug -5'
10336 5' -56.8 NC_002687.1 + 74083 0.66 0.972087
Target:  5'- uGUCGcCGACCgUCaugUCUCCCAgaCGcGACu -3'
miRNA:   3'- -CAGCuGCUGG-AGa--AGAGGGUg-GC-CUG- -5'
10336 5' -56.8 NC_002687.1 + 103700 0.66 0.972087
Target:  5'- -aCGACGACCUUguggaugUCUCUguUGCCGGugGCg -3'
miRNA:   3'- caGCUGCUGGAGa------AGAGG--GUGGCC--UG- -5'
10336 5' -56.8 NC_002687.1 + 269206 0.66 0.972087
Target:  5'- -cCGAUucACCUCUUUgaaggccCCCACCGGAa -3'
miRNA:   3'- caGCUGc-UGGAGAAGa------GGGUGGCCUg -5'
10336 5' -56.8 NC_002687.1 + 42266 0.66 0.971295
Target:  5'- -aCGAUGcgccuuuccaccacACCUgUUCUCUUugCGGACg -3'
miRNA:   3'- caGCUGC--------------UGGAgAAGAGGGugGCCUG- -5'
10336 5' -56.8 NC_002687.1 + 275660 0.66 0.969386
Target:  5'- gGUCaGCGGaguaUUCUUCUCCCGgUGGAUc -3'
miRNA:   3'- -CAGcUGCUg---GAGAAGAGGGUgGCCUG- -5'
10336 5' -56.8 NC_002687.1 + 264614 0.66 0.966503
Target:  5'- aGUCGAgGACCUCgaccgcCUCgaccaUCGCCGGGa -3'
miRNA:   3'- -CAGCUgCUGGAGaa----GAG-----GGUGGCCUg -5'
10336 5' -56.8 NC_002687.1 + 242469 0.66 0.965602
Target:  5'- cUCGACGACCUUguuugcaaaguacagCUgCUcCCGGACu -3'
miRNA:   3'- cAGCUGCUGGAGaa-------------GAgGGuGGCCUG- -5'
10336 5' -56.8 NC_002687.1 + 170188 0.67 0.963433
Target:  5'- -aUGAgGACCUCgucgaUCUgCCCuauuuGCCGGACc -3'
miRNA:   3'- caGCUgCUGGAGa----AGA-GGG-----UGGCCUG- -5'
10336 5' -56.8 NC_002687.1 + 253766 0.67 0.963433
Target:  5'- aUCGGUGACCgccgUUCUCCCuGCCGGcCg -3'
miRNA:   3'- cAGCUGCUGGag--AAGAGGG-UGGCCuG- -5'
10336 5' -56.8 NC_002687.1 + 212333 0.67 0.963433
Target:  5'- cUCGGCGuCUUCgggCUCgCCACCGucGACa -3'
miRNA:   3'- cAGCUGCuGGAGaa-GAG-GGUGGC--CUG- -5'
10336 5' -56.8 NC_002687.1 + 56020 0.67 0.956718
Target:  5'- cUUGACGACUg---CUUCCAuCCGGGCc -3'
miRNA:   3'- cAGCUGCUGGagaaGAGGGU-GGCCUG- -5'
10336 5' -56.8 NC_002687.1 + 326995 0.67 0.950774
Target:  5'- uUCGACGAacaCUCUgguucagggcaacauUUUUCCAgCGGACa -3'
miRNA:   3'- cAGCUGCUg--GAGA---------------AGAGGGUgGCCUG- -5'
10336 5' -56.8 NC_002687.1 + 256636 0.67 0.949207
Target:  5'- aGUCGGCGGCgCUaucgCUCCCG-CGGAa -3'
miRNA:   3'- -CAGCUGCUG-GAgaa-GAGGGUgGCCUg -5'
10336 5' -56.8 NC_002687.1 + 55562 0.67 0.946795
Target:  5'- aGUCGAUGGCCUuggccggguuggugcCUggCUCCCGugcaaccauCCGGAUg -3'
miRNA:   3'- -CAGCUGCUGGA---------------GAa-GAGGGU---------GGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.