miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10337 3' -53.2 NC_002687.1 + 279612 0.66 0.997117
Target:  5'- -gCugCUcgugguagugGCGCAGAUGAUgacaAGCGCUGg -3'
miRNA:   3'- caGugGA----------UGCGUCUACUG----UUGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 12949 0.66 0.99663
Target:  5'- cGUCGCaggaGCGCAGccGAUcacagAGCGCCGg -3'
miRNA:   3'- -CAGUGga--UGCGUCuaCUG-----UUGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 171413 0.66 0.99663
Target:  5'- gGUCAgCCccgGCGCGGAggagaguccUGGaAACGCCGUg -3'
miRNA:   3'- -CAGU-GGa--UGCGUCU---------ACUgUUGCGGCA- -5'
10337 3' -53.2 NC_002687.1 + 312032 0.66 0.99663
Target:  5'- cUCGCCcGCGCucugcGugAACGCCGg -3'
miRNA:   3'- cAGUGGaUGCGucua-CugUUGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 117947 0.66 0.99663
Target:  5'- -aCACCcgGCGCGGGUGuaGGCGUCGc -3'
miRNA:   3'- caGUGGa-UGCGUCUACugUUGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 145735 0.66 0.996076
Target:  5'- -cCACCU-CGCuGAUGAUGGCguaGCCGa -3'
miRNA:   3'- caGUGGAuGCGuCUACUGUUG---CGGCa -5'
10337 3' -53.2 NC_002687.1 + 152950 0.66 0.995451
Target:  5'- gGUUGCCga-GCGGAUcGugAACGCCa- -3'
miRNA:   3'- -CAGUGGaugCGUCUA-CugUUGCGGca -5'
10337 3' -53.2 NC_002687.1 + 279169 0.66 0.995451
Target:  5'- -gCGCgUGCGCAGc-GGCggUGCCGg -3'
miRNA:   3'- caGUGgAUGCGUCuaCUGuuGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 34438 0.66 0.995451
Target:  5'- -gUACUUugGUAGA-GACAAgGCUGUg -3'
miRNA:   3'- caGUGGAugCGUCUaCUGUUgCGGCA- -5'
10337 3' -53.2 NC_002687.1 + 114951 0.66 0.995451
Target:  5'- aUCACUgGCGC---UGACAGCGUCGg -3'
miRNA:   3'- cAGUGGaUGCGucuACUGUUGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 248340 0.66 0.994746
Target:  5'- -aCACCUuaGCuGCGGA-GACGGCGgCGUa -3'
miRNA:   3'- caGUGGA--UG-CGUCUaCUGUUGCgGCA- -5'
10337 3' -53.2 NC_002687.1 + 89564 0.66 0.994746
Target:  5'- cUCuugaUUGCGUAGAgaagGACGAUGCCGa -3'
miRNA:   3'- cAGug--GAUGCGUCUa---CUGUUGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 309699 0.66 0.994746
Target:  5'- gGUCGCUcaUGCGCcg--GACAGCGCCc- -3'
miRNA:   3'- -CAGUGG--AUGCGucuaCUGUUGCGGca -5'
10337 3' -53.2 NC_002687.1 + 200359 0.67 0.993956
Target:  5'- --aGCCUuCGCAGAcGuCAACGCCa- -3'
miRNA:   3'- cagUGGAuGCGUCUaCuGUUGCGGca -5'
10337 3' -53.2 NC_002687.1 + 69867 0.67 0.993956
Target:  5'- uGUCGCCgACGUcGGUGACGacaaccaccACGUCGg -3'
miRNA:   3'- -CAGUGGaUGCGuCUACUGU---------UGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 203885 0.67 0.993072
Target:  5'- -gCGCCacuCGCGGAUacgaaaucGGCGACGUCGUa -3'
miRNA:   3'- caGUGGau-GCGUCUA--------CUGUUGCGGCA- -5'
10337 3' -53.2 NC_002687.1 + 128887 0.67 0.993072
Target:  5'- cGUCAUCUGCGgAGGcguuauacccgUGAuCAuCGCCGUg -3'
miRNA:   3'- -CAGUGGAUGCgUCU-----------ACU-GUuGCGGCA- -5'
10337 3' -53.2 NC_002687.1 + 102493 0.67 0.993072
Target:  5'- cUCGCCU-UGCAGAcgUGACAucuccuCGCUGUu -3'
miRNA:   3'- cAGUGGAuGCGUCU--ACUGUu-----GCGGCA- -5'
10337 3' -53.2 NC_002687.1 + 56915 0.67 0.993072
Target:  5'- cGUCAacgggCUGUGU-GGUGGCGACGCCGUa -3'
miRNA:   3'- -CAGUg----GAUGCGuCUACUGUUGCGGCA- -5'
10337 3' -53.2 NC_002687.1 + 118189 0.67 0.992979
Target:  5'- -gCGCCUGCGUcgaacgaGGAcGACggUGCCGc -3'
miRNA:   3'- caGUGGAUGCG-------UCUaCUGuuGCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.