miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10337 3' -53.2 NC_002687.1 + 121899 1.07 0.015898
Target:  5'- uGUCACCUACGCAGAUGACAACGCCGUc -3'
miRNA:   3'- -CAGUGGAUGCGUCUACUGUUGCGGCA- -5'
10337 3' -53.2 NC_002687.1 + 56867 0.76 0.732912
Target:  5'- aUCGCCUGCGCGuGuAUGccGCGGCGCCGg -3'
miRNA:   3'- cAGUGGAUGCGU-C-UAC--UGUUGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 278596 0.74 0.846927
Target:  5'- aUUACCUACaGUuGAUGGCAACGUCGa -3'
miRNA:   3'- cAGUGGAUG-CGuCUACUGUUGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 328973 0.73 0.8621
Target:  5'- -aCGCCUGacgccUGCGGAUGAUAuauccACGCCGUg -3'
miRNA:   3'- caGUGGAU-----GCGUCUACUGU-----UGCGGCA- -5'
10337 3' -53.2 NC_002687.1 + 278939 0.73 0.876488
Target:  5'- uUCACCUuuauCGguGGUGGCAGCGCa-- -3'
miRNA:   3'- cAGUGGAu---GCguCUACUGUUGCGgca -5'
10337 3' -53.2 NC_002687.1 + 121545 0.72 0.890051
Target:  5'- uGUCAUCUGCGUAGGUGACAcggaaucUGUCGa -3'
miRNA:   3'- -CAGUGGAUGCGUCUACUGUu------GCGGCa -5'
10337 3' -53.2 NC_002687.1 + 18333 0.71 0.935522
Target:  5'- --gGCggGCGguGAUGACAgugACGCCGUg -3'
miRNA:   3'- cagUGgaUGCguCUACUGU---UGCGGCA- -5'
10337 3' -53.2 NC_002687.1 + 243404 0.71 0.940193
Target:  5'- gGUCAUUU-CGCAGAUGGCugaAACGCCu- -3'
miRNA:   3'- -CAGUGGAuGCGUCUACUG---UUGCGGca -5'
10337 3' -53.2 NC_002687.1 + 268539 0.7 0.948865
Target:  5'- uGUCACCguucuUGCAGGaugaUGuACGGCGCCGg -3'
miRNA:   3'- -CAGUGGau---GCGUCU----AC-UGUUGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 227551 0.7 0.95287
Target:  5'- uGUCccuCCUGCGCAGAgaACGGCGuuGg -3'
miRNA:   3'- -CAGu--GGAUGCGUCUacUGUUGCggCa -5'
10337 3' -53.2 NC_002687.1 + 269974 0.7 0.95287
Target:  5'- uGUCACCguuguUGCAguauGAUGuACGGCGCCGg -3'
miRNA:   3'- -CAGUGGau---GCGU----CUAC-UGUUGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 330311 0.69 0.966764
Target:  5'- cGUCGCCUAUGUuccuggucGAUGAaGACGCCa- -3'
miRNA:   3'- -CAGUGGAUGCGu-------CUACUgUUGCGGca -5'
10337 3' -53.2 NC_002687.1 + 292994 0.69 0.966764
Target:  5'- aUCAgCUGCGCGcgcucugccGAUGACAcUGCCGg -3'
miRNA:   3'- cAGUgGAUGCGU---------CUACUGUuGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 223438 0.69 0.969727
Target:  5'- cUCGCCUGCGCuggagggagacGGGUGACGGuggUGCUGg -3'
miRNA:   3'- cAGUGGAUGCG-----------UCUACUGUU---GCGGCa -5'
10337 3' -53.2 NC_002687.1 + 135829 0.69 0.969727
Target:  5'- gGUCACCgaucACgGguGugugGACAACGCCGg -3'
miRNA:   3'- -CAGUGGa---UG-CguCua--CUGUUGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 243803 0.69 0.975079
Target:  5'- cUCGauggCUGCGCcGAUGACAaggAUGCCGUg -3'
miRNA:   3'- cAGUg---GAUGCGuCUACUGU---UGCGGCA- -5'
10337 3' -53.2 NC_002687.1 + 154276 0.68 0.97949
Target:  5'- cGUgGCCgacACGCGGugugacauugaugGUGugGACGCCGa -3'
miRNA:   3'- -CAgUGGa--UGCGUC-------------UACugUUGCGGCa -5'
10337 3' -53.2 NC_002687.1 + 38701 0.68 0.979705
Target:  5'- cGUCACCcgugguaGCAucGAUGGCAAUGUCGUu -3'
miRNA:   3'- -CAGUGGaug----CGU--CUACUGUUGCGGCA- -5'
10337 3' -53.2 NC_002687.1 + 264505 0.68 0.981763
Target:  5'- aUCGCCaACGCGGAUaGAgAGCGgCGa -3'
miRNA:   3'- cAGUGGaUGCGUCUA-CUgUUGCgGCa -5'
10337 3' -53.2 NC_002687.1 + 101027 0.68 0.98366
Target:  5'- cGUCGCCgACGguGAaGGCGGCaCCGg -3'
miRNA:   3'- -CAGUGGaUGCguCUaCUGUUGcGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.