miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10337 5' -61.6 NC_002687.1 + 170716 0.66 0.887515
Target:  5'- gCCcCGGUucGUGGgCCGggUGGCagcgGGAACCUa -3'
miRNA:   3'- -GGuGCCG--CACCgGGC--ACCG----CCUUGGG- -5'
10337 5' -61.6 NC_002687.1 + 249358 0.66 0.881268
Target:  5'- cCCuuuCGGCGcccGGCCUGguugaugaaccUGGCGGugGACUCa -3'
miRNA:   3'- -GGu--GCCGCa--CCGGGC-----------ACCGCC--UUGGG- -5'
10337 5' -61.6 NC_002687.1 + 27942 0.66 0.881268
Target:  5'- uUACGGCGgaccaaggaaGGCaCGacucugaccagGGCGGAACCCc -3'
miRNA:   3'- gGUGCCGCa---------CCGgGCa----------CCGCCUUGGG- -5'
10337 5' -61.6 NC_002687.1 + 226817 0.66 0.874843
Target:  5'- -gGCGGUggcgGUGG-CgGUGGCGGAGCg- -3'
miRNA:   3'- ggUGCCG----CACCgGgCACCGCCUUGgg -5'
10337 5' -61.6 NC_002687.1 + 240189 0.67 0.847421
Target:  5'- gCCGCGGCGgccGGaCCagucUGGUgaaacccuuGGAACCCu -3'
miRNA:   3'- -GGUGCCGCa--CC-GGgc--ACCG---------CCUUGGG- -5'
10337 5' -61.6 NC_002687.1 + 241882 0.67 0.847421
Target:  5'- cCCGCcGCgGUGGCCaacgGUGGCGGcguGACUUu -3'
miRNA:   3'- -GGUGcCG-CACCGGg---CACCGCC---UUGGG- -5'
10337 5' -61.6 NC_002687.1 + 18241 0.67 0.832742
Target:  5'- gCAcCGGCGaacCCCGUGGCGGcAGCUUc -3'
miRNA:   3'- gGU-GCCGCaccGGGCACCGCC-UUGGG- -5'
10337 5' -61.6 NC_002687.1 + 209883 0.67 0.832742
Target:  5'- cCCGUGGU---GCCCGUGGUGGcagugguGCCCg -3'
miRNA:   3'- -GGUGCCGcacCGGGCACCGCCu------UGGG- -5'
10337 5' -61.6 NC_002687.1 + 316196 0.67 0.832742
Target:  5'- -uGCGGCGggaucuucgGGUgCGgcGGCGGcACCCg -3'
miRNA:   3'- ggUGCCGCa--------CCGgGCa-CCGCCuUGGG- -5'
10337 5' -61.6 NC_002687.1 + 239011 0.67 0.831992
Target:  5'- gCAUGGCGgagucaUGGUCCGguucGGgGGAggggaccACCCa -3'
miRNA:   3'- gGUGCCGC------ACCGGGCa---CCgCCU-------UGGG- -5'
10337 5' -61.6 NC_002687.1 + 80620 0.67 0.825178
Target:  5'- gCCAUGGCgGUGGUCgCG-GGCGuuuGCCUu -3'
miRNA:   3'- -GGUGCCG-CACCGG-GCaCCGCcu-UGGG- -5'
10337 5' -61.6 NC_002687.1 + 308421 0.67 0.817471
Target:  5'- aCC-CGGCGac-CCCGgcggGGCGGGcgcGCCCc -3'
miRNA:   3'- -GGuGCCGCaccGGGCa---CCGCCU---UGGG- -5'
10337 5' -61.6 NC_002687.1 + 307870 0.68 0.799239
Target:  5'- aCGCGGCGUgacugggaccaccaGGCCUGguggGGCGacuaccgcGCCCa -3'
miRNA:   3'- gGUGCCGCA--------------CCGGGCa---CCGCcu------UGGG- -5'
10337 5' -61.6 NC_002687.1 + 161183 0.68 0.793557
Target:  5'- gUCACGGCG-GGUCugaaCGUGGUGGuuCUCu -3'
miRNA:   3'- -GGUGCCGCaCCGG----GCACCGCCuuGGG- -5'
10337 5' -61.6 NC_002687.1 + 280951 0.68 0.792741
Target:  5'- gCGuCGGCGggGGCCUggGUGGCGGcagcggcGGCCg -3'
miRNA:   3'- gGU-GCCGCa-CCGGG--CACCGCC-------UUGGg -5'
10337 5' -61.6 NC_002687.1 + 85644 0.68 0.785342
Target:  5'- cCCACGGgaccaGggaGGCCuUGUGggccaGCGGGACCCu -3'
miRNA:   3'- -GGUGCCg----Ca--CCGG-GCAC-----CGCCUUGGG- -5'
10337 5' -61.6 NC_002687.1 + 206109 0.68 0.785342
Target:  5'- aCgACGGCGUGGUCCa---CGG-ACCCg -3'
miRNA:   3'- -GgUGCCGCACCGGGcaccGCCuUGGG- -5'
10337 5' -61.6 NC_002687.1 + 96947 0.68 0.784514
Target:  5'- -aACGGCGUcggucgaugucgaGGCCUGcacCGGAGCCCu -3'
miRNA:   3'- ggUGCCGCA-------------CCGGGCaccGCCUUGGG- -5'
10337 5' -61.6 NC_002687.1 + 85347 0.68 0.777014
Target:  5'- cCCGCGGguccCGUcGGUCC--GGCGGGugCCa -3'
miRNA:   3'- -GGUGCC----GCA-CCGGGcaCCGCCUugGG- -5'
10337 5' -61.6 NC_002687.1 + 329781 0.68 0.777014
Target:  5'- gCCGaGGCGU-GCCCgGUGGCGuGGCCg -3'
miRNA:   3'- -GGUgCCGCAcCGGG-CACCGCcUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.