Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10337 | 5' | -61.6 | NC_002687.1 | + | 18241 | 0.67 | 0.832742 |
Target: 5'- gCAcCGGCGaacCCCGUGGCGGcAGCUUc -3' miRNA: 3'- gGU-GCCGCaccGGGCACCGCC-UUGGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 27942 | 0.66 | 0.881268 |
Target: 5'- uUACGGCGgaccaaggaaGGCaCGacucugaccagGGCGGAACCCc -3' miRNA: 3'- gGUGCCGCa---------CCGgGCa----------CCGCCUUGGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 60186 | 0.7 | 0.652438 |
Target: 5'- aCACGGCGgacugccaagGGUuuGUcGGUGGAuggcgACCCg -3' miRNA: 3'- gGUGCCGCa---------CCGggCA-CCGCCU-----UGGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 72201 | 0.69 | 0.725077 |
Target: 5'- aCCGacUGGCcaGGCCC--GGCGGAugCCg -3' miRNA: 3'- -GGU--GCCGcaCCGGGcaCCGCCUugGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 80620 | 0.67 | 0.825178 |
Target: 5'- gCCAUGGCgGUGGUCgCG-GGCGuuuGCCUu -3' miRNA: 3'- -GGUGCCG-CACCGG-GCaCCGCcu-UGGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 85347 | 0.68 | 0.777014 |
Target: 5'- cCCGCGGguccCGUcGGUCC--GGCGGGugCCa -3' miRNA: 3'- -GGUGCC----GCA-CCGGGcaCCGCCUugGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 85524 | 0.71 | 0.594465 |
Target: 5'- cCCGcCGGCGcGGCaggaccaCGUGGCccuccaggagccgaGGGACCCa -3' miRNA: 3'- -GGU-GCCGCaCCGg------GCACCG--------------CCUUGGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 85644 | 0.68 | 0.785342 |
Target: 5'- cCCACGGgaccaGggaGGCCuUGUGggccaGCGGGACCCu -3' miRNA: 3'- -GGUGCCg----Ca--CCGG-GCAC-----CGCCUUGGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 85734 | 0.72 | 0.564365 |
Target: 5'- cCCGCGGUcugcgaaaGGCCgGUGGCacccgccggaccgacGGGACCCg -3' miRNA: 3'- -GGUGCCGca------CCGGgCACCG---------------CCUUGGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 95057 | 0.73 | 0.498611 |
Target: 5'- -aACGGCGUGGCCgagaGaccuaGGCGGAGCUUa -3' miRNA: 3'- ggUGCCGCACCGGg---Ca----CCGCCUUGGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 96947 | 0.68 | 0.784514 |
Target: 5'- -aACGGCGUcggucgaugucgaGGCCUGcacCGGAGCCCu -3' miRNA: 3'- ggUGCCGCA-------------CCGGGCaccGCCUUGGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 108108 | 0.76 | 0.355859 |
Target: 5'- uUCGCGGCGUGccaaGUCCGcGGCGGAugCUc -3' miRNA: 3'- -GGUGCCGCAC----CGGGCaCCGCCUugGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 121861 | 1.12 | 0.001778 |
Target: 5'- uCCACGGCGUGGCCCGUGGCGGAACCCu -3' miRNA: 3'- -GGUGCCGCACCGGGCACCGCCUUGGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 134064 | 0.71 | 0.643233 |
Target: 5'- aCCGCGcGCucuUGGCaCCGUGGCGucACCa -3' miRNA: 3'- -GGUGC-CGc--ACCG-GGCACCGCcuUGGg -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 138936 | 0.72 | 0.588054 |
Target: 5'- aUCAUGGCcaGGCCCGUGGacgucauuuUGGAAgCCu -3' miRNA: 3'- -GGUGCCGcaCCGGGCACC---------GCCUUgGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 161183 | 0.68 | 0.793557 |
Target: 5'- gUCACGGCG-GGUCugaaCGUGGUGGuuCUCu -3' miRNA: 3'- -GGUGCCGCaCCGG----GCACCGCCuuGGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 166804 | 0.69 | 0.733935 |
Target: 5'- aCCGCGGUGgacuuGCCCGUGcCGGA-CUCu -3' miRNA: 3'- -GGUGCCGCac---CGGGCACcGCCUuGGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 170716 | 0.66 | 0.887515 |
Target: 5'- gCCcCGGUucGUGGgCCGggUGGCagcgGGAACCUa -3' miRNA: 3'- -GGuGCCG--CACCgGGC--ACCG----CCUUGGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 206109 | 0.68 | 0.785342 |
Target: 5'- aCgACGGCGUGGUCCa---CGG-ACCCg -3' miRNA: 3'- -GgUGCCGCACCGGGcaccGCCuUGGG- -5' |
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10337 | 5' | -61.6 | NC_002687.1 | + | 209883 | 0.67 | 0.832742 |
Target: 5'- cCCGUGGU---GCCCGUGGUGGcagugguGCCCg -3' miRNA: 3'- -GGUGCCGcacCGGGCACCGCCu------UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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