miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10337 5' -61.6 NC_002687.1 + 60186 0.7 0.652438
Target:  5'- aCACGGCGgacugccaagGGUuuGUcGGUGGAuggcgACCCg -3'
miRNA:   3'- gGUGCCGCa---------CCGggCA-CCGCCU-----UGGG- -5'
10337 5' -61.6 NC_002687.1 + 85524 0.71 0.594465
Target:  5'- cCCGcCGGCGcGGCaggaccaCGUGGCccuccaggagccgaGGGACCCa -3'
miRNA:   3'- -GGU-GCCGCaCCGg------GCACCG--------------CCUUGGG- -5'
10337 5' -61.6 NC_002687.1 + 161183 0.68 0.793557
Target:  5'- gUCACGGCG-GGUCugaaCGUGGUGGuuCUCu -3'
miRNA:   3'- -GGUGCCGCaCCGG----GCACCGCCuuGGG- -5'
10337 5' -61.6 NC_002687.1 + 280951 0.68 0.792741
Target:  5'- gCGuCGGCGggGGCCUggGUGGCGGcagcggcGGCCg -3'
miRNA:   3'- gGU-GCCGCa-CCGGG--CACCGCC-------UUGGg -5'
10337 5' -61.6 NC_002687.1 + 96947 0.68 0.784514
Target:  5'- -aACGGCGUcggucgaugucgaGGCCUGcacCGGAGCCCu -3'
miRNA:   3'- ggUGCCGCA-------------CCGGGCaccGCCUUGGG- -5'
10337 5' -61.6 NC_002687.1 + 329781 0.68 0.777014
Target:  5'- gCCGaGGCGU-GCCCgGUGGCGuGGCCg -3'
miRNA:   3'- -GGUgCCGCAcCGGG-CACCGCcUUGGg -5'
10337 5' -61.6 NC_002687.1 + 18241 0.67 0.832742
Target:  5'- gCAcCGGCGaacCCCGUGGCGGcAGCUUc -3'
miRNA:   3'- gGU-GCCGCaccGGGCACCGCC-UUGGG- -5'
10337 5' -61.6 NC_002687.1 + 80620 0.67 0.825178
Target:  5'- gCCAUGGCgGUGGUCgCG-GGCGuuuGCCUu -3'
miRNA:   3'- -GGUGCCG-CACCGG-GCaCCGCcu-UGGG- -5'
10337 5' -61.6 NC_002687.1 + 206109 0.68 0.785342
Target:  5'- aCgACGGCGUGGUCCa---CGG-ACCCg -3'
miRNA:   3'- -GgUGCCGCACCGGGcaccGCCuUGGG- -5'
10337 5' -61.6 NC_002687.1 + 85347 0.68 0.777014
Target:  5'- cCCGCGGguccCGUcGGUCC--GGCGGGugCCa -3'
miRNA:   3'- -GGUGCC----GCA-CCGGGcaCCGCCUugGG- -5'
10337 5' -61.6 NC_002687.1 + 282167 0.68 0.760051
Target:  5'- -aGCGGCGggaguagGGCCUGcGGCGGcGGCUg -3'
miRNA:   3'- ggUGCCGCa------CCGGGCaCCGCC-UUGGg -5'
10337 5' -61.6 NC_002687.1 + 209883 0.67 0.832742
Target:  5'- cCCGUGGU---GCCCGUGGUGGcagugguGCCCg -3'
miRNA:   3'- -GGUGCCGcacCGGGCACCGCCu------UGGG- -5'
10337 5' -61.6 NC_002687.1 + 238788 0.68 0.768582
Target:  5'- aCCAUGGUGUGGCguugUUGUGGCGuGAAa-- -3'
miRNA:   3'- -GGUGCCGCACCG----GGCACCGC-CUUggg -5'
10337 5' -61.6 NC_002687.1 + 308421 0.67 0.817471
Target:  5'- aCC-CGGCGac-CCCGgcggGGCGGGcgcGCCCc -3'
miRNA:   3'- -GGuGCCGCaccGGGCa---CCGCCU---UGGG- -5'
10337 5' -61.6 NC_002687.1 + 226817 0.66 0.874843
Target:  5'- -gGCGGUggcgGUGG-CgGUGGCGGAGCg- -3'
miRNA:   3'- ggUGCCG----CACCgGgCACCGCCUUGgg -5'
10337 5' -61.6 NC_002687.1 + 134064 0.71 0.643233
Target:  5'- aCCGCGcGCucuUGGCaCCGUGGCGucACCa -3'
miRNA:   3'- -GGUGC-CGc--ACCG-GGCACCGCcuUGGg -5'
10337 5' -61.6 NC_002687.1 + 308615 0.73 0.507313
Target:  5'- gUCugGG-GUGGUgaGgGGCGGAGCCCg -3'
miRNA:   3'- -GGugCCgCACCGggCaCCGCCUUGGG- -5'
10337 5' -61.6 NC_002687.1 + 307615 0.72 0.551712
Target:  5'- -gGCGGCGgcgGuGCUgGUGGUGGAGgCCg -3'
miRNA:   3'- ggUGCCGCa--C-CGGgCACCGCCUUgGG- -5'
10337 5' -61.6 NC_002687.1 + 85734 0.72 0.564365
Target:  5'- cCCGCGGUcugcgaaaGGCCgGUGGCacccgccggaccgacGGGACCCg -3'
miRNA:   3'- -GGUGCCGca------CCGGgCACCG---------------CCUUGGG- -5'
10337 5' -61.6 NC_002687.1 + 138936 0.72 0.588054
Target:  5'- aUCAUGGCcaGGCCCGUGGacgucauuuUGGAAgCCu -3'
miRNA:   3'- -GGUGCCGcaCCGGGCACC---------GCCUUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.