miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10338 3' -52.5 NC_002687.1 + 237295 0.66 0.998077
Target:  5'- cGUGUCGUGCUucacGgCCAUCAUGGC-GCGa -3'
miRNA:   3'- -UAUAGCGUGG----UgGGUGGUAUCGuUGC- -5'
10338 3' -52.5 NC_002687.1 + 10377 0.66 0.997723
Target:  5'- ---cCGCGCCAUCCGCaguuuCAaGGCAGCc -3'
miRNA:   3'- uauaGCGUGGUGGGUG-----GUaUCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 210349 0.66 0.997723
Target:  5'- -cAUCuGCACCACCggCACCAcgGGCAc-- -3'
miRNA:   3'- uaUAG-CGUGGUGG--GUGGUa-UCGUugc -5'
10338 3' -52.5 NC_002687.1 + 40820 0.66 0.997685
Target:  5'- -gGUUGUGCCACCCucuguaaACCGUgGGUGACa -3'
miRNA:   3'- uaUAGCGUGGUGGG-------UGGUA-UCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 216194 0.66 0.997316
Target:  5'- gAUGUCaGCAUUGUCCACCucgcAGCAACGg -3'
miRNA:   3'- -UAUAG-CGUGGUGGGUGGua--UCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 25801 0.66 0.997316
Target:  5'- uUAUCGaCGacaaCACCCuCCGgcGCAACGg -3'
miRNA:   3'- uAUAGC-GUg---GUGGGuGGUauCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 100668 0.66 0.997316
Target:  5'- ----gGUGCCGCCuuCACCGUcGGCGACGc -3'
miRNA:   3'- uauagCGUGGUGG--GUGGUA-UCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 60567 0.66 0.997316
Target:  5'- -aGUCGCgggucGCCAUCCACCGacaaacccuUGGCAGu- -3'
miRNA:   3'- uaUAGCG-----UGGUGGGUGGU---------AUCGUUgc -5'
10338 3' -52.5 NC_002687.1 + 159122 0.66 0.997316
Target:  5'- aGUGUUGCACCgGCCuCGCCc--GCGGCu -3'
miRNA:   3'- -UAUAGCGUGG-UGG-GUGGuauCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 279622 0.66 0.997273
Target:  5'- ----gGCACCACCUGCUgcucgugGUAGUGGCGc -3'
miRNA:   3'- uauagCGUGGUGGGUGG-------UAUCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 18685 0.66 0.996851
Target:  5'- cUGUCauCACCGCCCGCCcccgaAGCAGgGg -3'
miRNA:   3'- uAUAGc-GUGGUGGGUGGua---UCGUUgC- -5'
10338 3' -52.5 NC_002687.1 + 300620 0.66 0.996851
Target:  5'- -aAUCGUAgCCACCCgaGCCcaAGUGGCGg -3'
miRNA:   3'- uaUAGCGU-GGUGGG--UGGuaUCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 117569 0.66 0.996851
Target:  5'- --uUCGgAgCACCgGCgAUGGCGACGc -3'
miRNA:   3'- uauAGCgUgGUGGgUGgUAUCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 311290 0.66 0.99632
Target:  5'- cGUggCGCGCCGCaaCCGCCGUucuGUGACa -3'
miRNA:   3'- -UAuaGCGUGGUG--GGUGGUAu--CGUUGc -5'
10338 3' -52.5 NC_002687.1 + 322922 0.66 0.99632
Target:  5'- ---aCGaugaaaGgCACCCACCAUGGCGcccACGg -3'
miRNA:   3'- uauaGCg-----UgGUGGGUGGUAUCGU---UGC- -5'
10338 3' -52.5 NC_002687.1 + 270386 0.66 0.99632
Target:  5'- ---cUGCAUacaAUCCACCGUuuccGGCAGCGg -3'
miRNA:   3'- uauaGCGUGg--UGGGUGGUA----UCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 310245 0.67 0.995718
Target:  5'- ---cCcCACCGCCCcacCCAUAGCGAUa -3'
miRNA:   3'- uauaGcGUGGUGGGu--GGUAUCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 64382 0.67 0.995718
Target:  5'- uAUGUcCGCACCgGCCUucGCCAaGGCGAUa -3'
miRNA:   3'- -UAUA-GCGUGG-UGGG--UGGUaUCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 261668 0.67 0.995718
Target:  5'- -cGUUGcCGCCGCCCGaaaUCAgAGCAACa -3'
miRNA:   3'- uaUAGC-GUGGUGGGU---GGUaUCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 81207 0.67 0.995718
Target:  5'- ----gGCACCGCUaCGCC--GGCAACGg -3'
miRNA:   3'- uauagCGUGGUGG-GUGGuaUCGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.