miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10338 3' -52.5 NC_002687.1 + 129733 1.08 0.013784
Target:  5'- cAUAUCGCACCACCCACCAUAGCAACGg -3'
miRNA:   3'- -UAUAGCGUGGUGGGUGGUAUCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 314562 0.76 0.727741
Target:  5'- -cGUCGCcucguacgaccaccAUCGCCCAuCCGUGGCGACGg -3'
miRNA:   3'- uaUAGCG--------------UGGUGGGU-GGUAUCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 323197 0.76 0.777839
Target:  5'- -cAUCGCACCgACgUACCAUAGCAcCGu -3'
miRNA:   3'- uaUAGCGUGG-UGgGUGGUAUCGUuGC- -5'
10338 3' -52.5 NC_002687.1 + 114037 0.73 0.876317
Target:  5'- uUGUUGU-CCACgCCACCAaAGCAACGa -3'
miRNA:   3'- uAUAGCGuGGUG-GGUGGUaUCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 314115 0.73 0.896595
Target:  5'- cUGUCgGCACCGCcgCCAUCAUAGCuuGGCGg -3'
miRNA:   3'- uAUAG-CGUGGUG--GGUGGUAUCG--UUGC- -5'
10338 3' -52.5 NC_002687.1 + 27560 0.72 0.931064
Target:  5'- --cUCGCGCCGCUCagcgACCGUgucgggGGCGACGa -3'
miRNA:   3'- uauAGCGUGGUGGG----UGGUA------UCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 294495 0.72 0.931064
Target:  5'- ---aCGCuuGCUGCCCGCCAcAGCAACu -3'
miRNA:   3'- uauaGCG--UGGUGGGUGGUaUCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 260170 0.72 0.931064
Target:  5'- uUGUCgGCGCUGCCCGCCuUGGCcAUGa -3'
miRNA:   3'- uAUAG-CGUGGUGGGUGGuAUCGuUGC- -5'
10338 3' -52.5 NC_002687.1 + 302944 0.71 0.940706
Target:  5'- ---aCGCACCGCCCACgu--GCAACc -3'
miRNA:   3'- uauaGCGUGGUGGGUGguauCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 311114 0.7 0.96084
Target:  5'- ---gUGCACUACCCGCCAUcguGCGuGCGu -3'
miRNA:   3'- uauaGCGUGGUGGGUGGUAu--CGU-UGC- -5'
10338 3' -52.5 NC_002687.1 + 105663 0.7 0.96084
Target:  5'- -cGUCGUccauuGCCGCCCACCAggcuuGCAAa- -3'
miRNA:   3'- uaUAGCG-----UGGUGGGUGGUau---CGUUgc -5'
10338 3' -52.5 NC_002687.1 + 309224 0.7 0.964211
Target:  5'- ---cCGCugacGCC-CCCACCAccgAGCAGCGg -3'
miRNA:   3'- uauaGCG----UGGuGGGUGGUa--UCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 298980 0.7 0.964211
Target:  5'- ---gCGCugCGCCCGCCuccggAGCAcCGa -3'
miRNA:   3'- uauaGCGugGUGGGUGGua---UCGUuGC- -5'
10338 3' -52.5 NC_002687.1 + 80823 0.7 0.967373
Target:  5'- ----gGCGCuUGCCCACCGgAGCAACGc -3'
miRNA:   3'- uauagCGUG-GUGGGUGGUaUCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 18234 0.7 0.967373
Target:  5'- -cGUCGCAgCACCgGcgaaccCCGUGGCGGCa -3'
miRNA:   3'- uaUAGCGUgGUGGgU------GGUAUCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 288699 0.7 0.970333
Target:  5'- ----aGCAUCACCCACaCAUcucaAGCAGCu -3'
miRNA:   3'- uauagCGUGGUGGGUG-GUA----UCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 225714 0.7 0.970333
Target:  5'- --cUCGUGCCACCCGCUuuaccuuGCGACc -3'
miRNA:   3'- uauAGCGUGGUGGGUGGuau----CGUUGc -5'
10338 3' -52.5 NC_002687.1 + 210322 0.7 0.970333
Target:  5'- -cAUCuGCACCACCggCACCAcgGGCAcauACGg -3'
miRNA:   3'- uaUAG-CGUGGUGG--GUGGUa-UCGU---UGC- -5'
10338 3' -52.5 NC_002687.1 + 303834 0.7 0.970333
Target:  5'- -cAUCGCgGCCACCgAUgAcAGCAGCGg -3'
miRNA:   3'- uaUAGCG-UGGUGGgUGgUaUCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 275652 0.69 0.973095
Target:  5'- -cGUCGCGCCGUCCuCUA-AGCAGCGa -3'
miRNA:   3'- uaUAGCGUGGUGGGuGGUaUCGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.