miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10338 3' -52.5 NC_002687.1 + 225442 0.67 0.995718
Target:  5'- gGUGUUGCGCCACCacguuccucuCCGgcuGCAGCc -3'
miRNA:   3'- -UAUAGCGUGGUGGgu--------GGUau-CGUUGc -5'
10338 3' -52.5 NC_002687.1 + 153855 0.67 0.99532
Target:  5'- --uUCGUgcgccaggggaacacGCCACCCccuucGCCGUAGCaAACGu -3'
miRNA:   3'- uauAGCG---------------UGGUGGG-----UGGUAUCG-UUGC- -5'
10338 3' -52.5 NC_002687.1 + 156440 0.67 0.995038
Target:  5'- ---aCGC-UCACCaCGCCAUGuGCGACGu -3'
miRNA:   3'- uauaGCGuGGUGG-GUGGUAU-CGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 65226 0.67 0.994273
Target:  5'- ---aUGUGCCGCCCACaa-AGCAGCc -3'
miRNA:   3'- uauaGCGUGGUGGGUGguaUCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 70008 0.67 0.994273
Target:  5'- -cAUCgGCACCGCCgACCA---CAACGa -3'
miRNA:   3'- uaUAG-CGUGGUGGgUGGUaucGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 279253 0.67 0.993415
Target:  5'- -cAUCuGCGCCA-CUACCAcgAGCAGCa -3'
miRNA:   3'- uaUAG-CGUGGUgGGUGGUa-UCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 251911 0.67 0.993415
Target:  5'- ---aCGCACCGCgaggCUACCAUGGCcuggaagagcagGACGa -3'
miRNA:   3'- uauaGCGUGGUG----GGUGGUAUCG------------UUGC- -5'
10338 3' -52.5 NC_002687.1 + 240032 0.67 0.992458
Target:  5'- -gGUCGUA-CACCCGCCGcuUAGCGGg- -3'
miRNA:   3'- uaUAGCGUgGUGGGUGGU--AUCGUUgc -5'
10338 3' -52.5 NC_002687.1 + 47857 0.67 0.992458
Target:  5'- ----aGUuCCACCCACCGUuGCAAUa -3'
miRNA:   3'- uauagCGuGGUGGGUGGUAuCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 282988 0.67 0.992458
Target:  5'- ------uGCCGCCCGCCGUGGCuguAGCa -3'
miRNA:   3'- uauagcgUGGUGGGUGGUAUCG---UUGc -5'
10338 3' -52.5 NC_002687.1 + 317754 0.67 0.992356
Target:  5'- uAUAUCGCgggagaGCCucaugcCCCGCCAguccuuuUAGCAACa -3'
miRNA:   3'- -UAUAGCG------UGGu-----GGGUGGU-------AUCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 84523 0.68 0.991393
Target:  5'- -cGUCGaCGuuGCCCACCAcGGUGGCa -3'
miRNA:   3'- uaUAGC-GUggUGGGUGGUaUCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 90358 0.68 0.991393
Target:  5'- -gAUUGCAUCAgCCuuGCCAUGGCGuCGu -3'
miRNA:   3'- uaUAGCGUGGUgGG--UGGUAUCGUuGC- -5'
10338 3' -52.5 NC_002687.1 + 309144 0.68 0.990212
Target:  5'- --cUCGaCACCACCgAUCGUGGaAACGg -3'
miRNA:   3'- uauAGC-GUGGUGGgUGGUAUCgUUGC- -5'
10338 3' -52.5 NC_002687.1 + 210246 0.68 0.990212
Target:  5'- ----gGCACCACugCCACCAcgGGCAccACGg -3'
miRNA:   3'- uauagCGUGGUG--GGUGGUa-UCGU--UGC- -5'
10338 3' -52.5 NC_002687.1 + 231493 0.68 0.988908
Target:  5'- ------uGCCACCUACUGUAGCAACc -3'
miRNA:   3'- uauagcgUGGUGGGUGGUAUCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 82793 0.68 0.988908
Target:  5'- -cAUCGCAUCGCCCACauacuggaAGCAAa- -3'
miRNA:   3'- uaUAGCGUGGUGGGUGgua-----UCGUUgc -5'
10338 3' -52.5 NC_002687.1 + 275387 0.68 0.987473
Target:  5'- ---aUGCGCgagUAUCCACCAUcGGCAGCGa -3'
miRNA:   3'- uauaGCGUG---GUGGGUGGUA-UCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 22561 0.68 0.985899
Target:  5'- aGUGUCGaacuGCCACCaGCCGUAcauaaugcGCGACGg -3'
miRNA:   3'- -UAUAGCg---UGGUGGgUGGUAU--------CGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 303780 0.68 0.984177
Target:  5'- ---gCGCACCcacagcCCCACCAUuuuggucgccGGCAGCa -3'
miRNA:   3'- uauaGCGUGGu-----GGGUGGUA----------UCGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.