miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10338 3' -52.5 NC_002687.1 + 323197 0.76 0.777839
Target:  5'- -cAUCGCACCgACgUACCAUAGCAcCGu -3'
miRNA:   3'- uaUAGCGUGG-UGgGUGGUAUCGUuGC- -5'
10338 3' -52.5 NC_002687.1 + 65226 0.67 0.994273
Target:  5'- ---aUGUGCCGCCCACaa-AGCAGCc -3'
miRNA:   3'- uauaGCGUGGUGGGUGguaUCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 81207 0.67 0.995718
Target:  5'- ----gGCACCGCUaCGCC--GGCAACGg -3'
miRNA:   3'- uauagCGUGGUGG-GUGGuaUCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 237295 0.66 0.998077
Target:  5'- cGUGUCGUGCUucacGgCCAUCAUGGC-GCGa -3'
miRNA:   3'- -UAUAGCGUGG----UgGGUGGUAUCGuUGC- -5'
10338 3' -52.5 NC_002687.1 + 18234 0.7 0.967373
Target:  5'- -cGUCGCAgCACCgGcgaaccCCGUGGCGGCa -3'
miRNA:   3'- uaUAGCGUgGUGGgU------GGUAUCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 303834 0.7 0.970333
Target:  5'- -cAUCGCgGCCACCgAUgAcAGCAGCGg -3'
miRNA:   3'- uaUAGCG-UGGUGGgUGgUaUCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 269518 0.69 0.973095
Target:  5'- cGUGUUgGCACCACCaguGCCAaGGCGugGc -3'
miRNA:   3'- -UAUAG-CGUGGUGGg--UGGUaUCGUugC- -5'
10338 3' -52.5 NC_002687.1 + 279288 0.69 0.975666
Target:  5'- ----gGCACCaccgGCCCACCAgaagAGuCAGCGg -3'
miRNA:   3'- uauagCGUGG----UGGGUGGUa---UC-GUUGC- -5'
10338 3' -52.5 NC_002687.1 + 231493 0.68 0.988908
Target:  5'- ------uGCCACCUACUGUAGCAACc -3'
miRNA:   3'- uauagcgUGGUGGGUGGUAUCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 279253 0.67 0.993415
Target:  5'- -cAUCuGCGCCA-CUACCAcgAGCAGCa -3'
miRNA:   3'- uaUAG-CGUGGUgGGUGGUa-UCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 90358 0.68 0.991393
Target:  5'- -gAUUGCAUCAgCCuuGCCAUGGCGuCGu -3'
miRNA:   3'- uaUAGCGUGGUgGG--UGGUAUCGUuGC- -5'
10338 3' -52.5 NC_002687.1 + 303780 0.68 0.984177
Target:  5'- ---gCGCACCcacagcCCCACCAUuuuggucgccGGCAGCa -3'
miRNA:   3'- uauaGCGUGGu-----GGGUGGUA----------UCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 114037 0.73 0.876317
Target:  5'- uUGUUGU-CCACgCCACCAaAGCAACGa -3'
miRNA:   3'- uAUAGCGuGGUG-GGUGGUaUCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 317754 0.67 0.992356
Target:  5'- uAUAUCGCgggagaGCCucaugcCCCGCCAguccuuuUAGCAACa -3'
miRNA:   3'- -UAUAGCG------UGGu-----GGGUGGU-------AUCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 302944 0.71 0.940706
Target:  5'- ---aCGCACCGCCCACgu--GCAACc -3'
miRNA:   3'- uauaGCGUGGUGGGUGguauCGUUGc -5'
10338 3' -52.5 NC_002687.1 + 262820 0.69 0.980262
Target:  5'- --uUCGuCACCugCCGCC---GCAACGa -3'
miRNA:   3'- uauAGC-GUGGugGGUGGuauCGUUGC- -5'
10338 3' -52.5 NC_002687.1 + 282988 0.67 0.992458
Target:  5'- ------uGCCGCCCGCCGUGGCuguAGCa -3'
miRNA:   3'- uauagcgUGGUGGGUGGUAUCG---UUGc -5'
10338 3' -52.5 NC_002687.1 + 153855 0.67 0.99532
Target:  5'- --uUCGUgcgccaggggaacacGCCACCCccuucGCCGUAGCaAACGu -3'
miRNA:   3'- uauAGCG---------------UGGUGGG-----UGGUAUCG-UUGC- -5'
10338 3' -52.5 NC_002687.1 + 298980 0.7 0.964211
Target:  5'- ---gCGCugCGCCCGCCuccggAGCAcCGa -3'
miRNA:   3'- uauaGCGugGUGGGUGGua---UCGUuGC- -5'
10338 3' -52.5 NC_002687.1 + 122460 0.69 0.973095
Target:  5'- uUcgCGCACCGCCCuggguCCAggAGCAuucuguGCGa -3'
miRNA:   3'- uAuaGCGUGGUGGGu----GGUa-UCGU------UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.