miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10338 5' -55.9 NC_002687.1 + 257393 0.66 0.984487
Target:  5'- uCGCGaUGUgcccgaCGCGCucGGGCCaGUGUGUAu -3'
miRNA:   3'- -GCGCaACA------GUGCG--UCCGGcUACACGU- -5'
10338 5' -55.9 NC_002687.1 + 153960 0.66 0.984487
Target:  5'- uCGCa--GUUGCGCAGcucGCCGAcGUGCAu -3'
miRNA:   3'- -GCGcaaCAGUGCGUC---CGGCUaCACGU- -5'
10338 5' -55.9 NC_002687.1 + 52072 0.66 0.9827
Target:  5'- uGCGUguUCAaGCGGGCCGaAUGcUGUAg -3'
miRNA:   3'- gCGCAacAGUgCGUCCGGC-UAC-ACGU- -5'
10338 5' -55.9 NC_002687.1 + 145307 0.66 0.980762
Target:  5'- aGCGUUGUgaacgGCGCGGGCaccgaGGUG-GCu -3'
miRNA:   3'- gCGCAACAg----UGCGUCCGg----CUACaCGu -5'
10338 5' -55.9 NC_002687.1 + 13290 0.66 0.978665
Target:  5'- uGCGUUGgguaagagcgaCGCaGCAGGUaucguaGGUGUGCAu -3'
miRNA:   3'- gCGCAACa----------GUG-CGUCCGg-----CUACACGU- -5'
10338 5' -55.9 NC_002687.1 + 254039 0.66 0.976405
Target:  5'- -cCGUUGUgACGCGuuuuuGCCuGGUGUGCAa -3'
miRNA:   3'- gcGCAACAgUGCGUc----CGG-CUACACGU- -5'
10338 5' -55.9 NC_002687.1 + 105771 0.66 0.976405
Target:  5'- aGCGUUaUCGCGgAGGCuCGuacgucugGUGCAc -3'
miRNA:   3'- gCGCAAcAGUGCgUCCG-GCua------CACGU- -5'
10338 5' -55.9 NC_002687.1 + 30479 0.66 0.976405
Target:  5'- --gGUUGU-GCGaCGGGCCGAUGUagGCGa -3'
miRNA:   3'- gcgCAACAgUGC-GUCCGGCUACA--CGU- -5'
10338 5' -55.9 NC_002687.1 + 279665 0.67 0.971095
Target:  5'- aCGCGUcaggGUC-CGCugacucuucugguGGGCCGGUGgUGCc -3'
miRNA:   3'- -GCGCAa---CAGuGCG-------------UCCGGCUAC-ACGu -5'
10338 5' -55.9 NC_002687.1 + 140617 0.67 0.958002
Target:  5'- cCGCuGUUGUUggcguGCGCAguuguguccuucguGGCCGcuGUGUGCAc -3'
miRNA:   3'- -GCG-CAACAG-----UGCGU--------------CCGGC--UACACGU- -5'
10338 5' -55.9 NC_002687.1 + 22183 0.68 0.947715
Target:  5'- aGUGUccGUCGCGCAuuauguacGGCUGGUG-GCAg -3'
miRNA:   3'- gCGCAa-CAGUGCGU--------CCGGCUACaCGU- -5'
10338 5' -55.9 NC_002687.1 + 251219 0.68 0.940894
Target:  5'- aCGCGggacgagcuucucaUGUCugGCAuGGaCGAUGUGCu -3'
miRNA:   3'- -GCGCa-------------ACAGugCGU-CCgGCUACACGu -5'
10338 5' -55.9 NC_002687.1 + 214360 0.69 0.919288
Target:  5'- aGCGUcGUUuguCAGGCUGAUGUGCc -3'
miRNA:   3'- gCGCAaCAGugcGUCCGGCUACACGu -5'
10338 5' -55.9 NC_002687.1 + 290594 0.69 0.908079
Target:  5'- uGCGUgUGUCAUGCGcuGCUGcUGUGCAa -3'
miRNA:   3'- gCGCA-ACAGUGCGUc-CGGCuACACGU- -5'
10338 5' -55.9 NC_002687.1 + 129696 1.09 0.006769
Target:  5'- gCGCGUUGUCACGCAGGCCGAUGUGCAa -3'
miRNA:   3'- -GCGCAACAGUGCGUCCGGCUACACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.