miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10339 5' -53.9 NC_002687.1 + 214911 0.66 0.993349
Target:  5'- gGUGUGgccaagGUCCGCCGC-CGCCucuuuccUGUAc -3'
miRNA:   3'- aCACGUa-----CAGGUGGCGuGUGGu------ACAU- -5'
10339 5' -53.9 NC_002687.1 + 34023 0.66 0.993349
Target:  5'- gGUGUAcaGUuuGCCGUACcCCGUGUGc -3'
miRNA:   3'- aCACGUa-CAggUGGCGUGuGGUACAU- -5'
10339 5' -53.9 NC_002687.1 + 120844 0.66 0.993349
Target:  5'- uUGUGCAUGUcCCACUGguUcuGCCAg--- -3'
miRNA:   3'- -ACACGUACA-GGUGGCguG--UGGUacau -5'
10339 5' -53.9 NC_002687.1 + 117106 0.66 0.990137
Target:  5'- aUGUcCGUGUCUAUUcgGUACGCCAUGUu -3'
miRNA:   3'- -ACAcGUACAGGUGG--CGUGUGGUACAu -5'
10339 5' -53.9 NC_002687.1 + 270548 0.66 0.988415
Target:  5'- aUGUGCGauugaauccauggaUGUCCACgGCACccGCCcacucgGUGUGa -3'
miRNA:   3'- -ACACGU--------------ACAGGUGgCGUG--UGG------UACAU- -5'
10339 5' -53.9 NC_002687.1 + 284523 0.67 0.98392
Target:  5'- gUGUGUGUGUgUCGCCGCACAUUGcuuaggcUGUAa -3'
miRNA:   3'- -ACACGUACA-GGUGGCGUGUGGU-------ACAU- -5'
10339 5' -53.9 NC_002687.1 + 57182 0.67 0.977985
Target:  5'- --gGCG-GUCCACgGCAUACUGUGUu -3'
miRNA:   3'- acaCGUaCAGGUGgCGUGUGGUACAu -5'
10339 5' -53.9 NC_002687.1 + 311294 0.69 0.949472
Target:  5'- cGUGCGUGgCgCGCCGCAacCGCCGuucUGUGa -3'
miRNA:   3'- aCACGUACaG-GUGGCGU--GUGGU---ACAU- -5'
10339 5' -53.9 NC_002687.1 + 152658 0.69 0.940793
Target:  5'- uUGUGCGUGUgCAgCGCACAggAUGUu -3'
miRNA:   3'- -ACACGUACAgGUgGCGUGUggUACAu -5'
10339 5' -53.9 NC_002687.1 + 312078 0.7 0.936113
Target:  5'- cGUGCuGUGagCGCCGCuuGCACUGUGUGg -3'
miRNA:   3'- aCACG-UACagGUGGCG--UGUGGUACAU- -5'
10339 5' -53.9 NC_002687.1 + 154648 0.7 0.936113
Target:  5'- uUGUGUcgG-CCACCGC-CACCGUa-- -3'
miRNA:   3'- -ACACGuaCaGGUGGCGuGUGGUAcau -5'
10339 5' -53.9 NC_002687.1 + 22180 0.7 0.926066
Target:  5'- --gGCAgUGUCCGUCGCGCAUUAUGUAc -3'
miRNA:   3'- acaCGU-ACAGGUGGCGUGUGGUACAU- -5'
10339 5' -53.9 NC_002687.1 + 64230 0.72 0.86965
Target:  5'- gUGUGUugccguaguUGUCCACCGCguuuacgaaaGCGCCGUGa- -3'
miRNA:   3'- -ACACGu--------ACAGGUGGCG----------UGUGGUACau -5'
10339 5' -53.9 NC_002687.1 + 140137 1.07 0.010763
Target:  5'- uUGUGCAUGUCCACCGCACACCAUGUAa -3'
miRNA:   3'- -ACACGUACAGGUGGCGUGUGGUACAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.