miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1034 5' -56.8 NC_000924.1 + 55496 0.66 0.681957
Target:  5'- aAGUUGUCgAACGCCCugUACCG-AugGc -3'
miRNA:   3'- -UCGGUAG-UUGCGGGugGUGGCcUugC- -5'
1034 5' -56.8 NC_000924.1 + 20383 0.66 0.681957
Target:  5'- uGCgGgugCAuaGCCCGCCuuuACCGGAACa -3'
miRNA:   3'- uCGgUa--GUugCGGGUGG---UGGCCUUGc -5'
1034 5' -56.8 NC_000924.1 + 54483 0.66 0.67124
Target:  5'- cAGCCuUCAuguguacCGCUgaCACCACCGGAuCa -3'
miRNA:   3'- -UCGGuAGUu------GCGG--GUGGUGGCCUuGc -5'
1034 5' -56.8 NC_000924.1 + 51447 0.66 0.659411
Target:  5'- uGCCGUCAccggaugcgcagaACGCgaCAgCACCGGuACGu -3'
miRNA:   3'- uCGGUAGU-------------UGCGg-GUgGUGGCCuUGC- -5'
1034 5' -56.8 NC_000924.1 + 50154 0.66 0.643236
Target:  5'- cGCUAUCAggaaaacacggcauuGCGUgagACCGCCGGAAUGg -3'
miRNA:   3'- uCGGUAGU---------------UGCGgg-UGGUGGCCUUGC- -5'
1034 5' -56.8 NC_000924.1 + 57010 0.66 0.635677
Target:  5'- uAGUCAauccagaauuUCAGCGauuccggugugauaUCCACCgcGCCGGGACGg -3'
miRNA:   3'- -UCGGU----------AGUUGC--------------GGGUGG--UGGCCUUGC- -5'
1034 5' -56.8 NC_000924.1 + 6043 0.67 0.583973
Target:  5'- aAGCCGauuUUAugGCcucgaaaCCACCgaGCCGGAACu -3'
miRNA:   3'- -UCGGU---AGUugCG-------GGUGG--UGGCCUUGc -5'
1034 5' -56.8 NC_000924.1 + 45414 0.67 0.57435
Target:  5'- cGCCAcUCGuGCGCCaguCGCCagaGCCGGAACc -3'
miRNA:   3'- uCGGU-AGU-UGCGG---GUGG---UGGCCUUGc -5'
1034 5' -56.8 NC_000924.1 + 27673 0.68 0.54152
Target:  5'- cAGCCA-CAGCGCaCCauagccaACCGCCaGGACa -3'
miRNA:   3'- -UCGGUaGUUGCG-GG-------UGGUGGcCUUGc -5'
1034 5' -56.8 NC_000924.1 + 46166 0.7 0.45148
Target:  5'- cAGCC--CAGCGUCCGCCAgCCaGAugGg -3'
miRNA:   3'- -UCGGuaGUUGCGGGUGGU-GGcCUugC- -5'
1034 5' -56.8 NC_000924.1 + 51215 0.71 0.395616
Target:  5'- uGCCGUCGGCGCgUUGCCACgGGcaaGGCGg -3'
miRNA:   3'- uCGGUAGUUGCG-GGUGGUGgCC---UUGC- -5'
1034 5' -56.8 NC_000924.1 + 54899 0.72 0.347674
Target:  5'- aGGCCGaucuggaugaguaccUCuACGCCCgucACgCGCCGGAACGu -3'
miRNA:   3'- -UCGGU---------------AGuUGCGGG---UG-GUGGCCUUGC- -5'
1034 5' -56.8 NC_000924.1 + 23729 0.78 0.129231
Target:  5'- uGGUgGuUCAGCGUUCACCACCGGAGCc -3'
miRNA:   3'- -UCGgU-AGUUGCGGGUGGUGGCCUUGc -5'
1034 5' -56.8 NC_000924.1 + 7039 1.09 0.000837
Target:  5'- cAGCCAUCAACGCCCACCACCGGAACGa -3'
miRNA:   3'- -UCGGUAGUUGCGGGUGGUGGCCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.