miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10340 5' -55.6 NC_002687.1 + 214556 0.66 0.985623
Target:  5'- -gGCGGCGGAccuuGGCACaCCUCa-- -3'
miRNA:   3'- cgUGCCGCCUcacuUCGUG-GGAGaac -5'
10340 5' -55.6 NC_002687.1 + 290658 0.66 0.981514
Target:  5'- uCugGGC-GAGUGAccgucgucuccucaGGCAUgCUCUUGg -3'
miRNA:   3'- cGugCCGcCUCACU--------------UCGUGgGAGAAC- -5'
10340 5' -55.6 NC_002687.1 + 275265 0.67 0.967614
Target:  5'- -gGCGGCGGAGUGcaGAGCAgUCCa---- -3'
miRNA:   3'- cgUGCCGCCUCAC--UUCGU-GGGagaac -5'
10340 5' -55.6 NC_002687.1 + 25416 0.67 0.967614
Target:  5'- uGCACGGCGGuGcaGGAGUACCgCUa--- -3'
miRNA:   3'- -CGUGCCGCCuCa-CUUCGUGG-GAgaac -5'
10340 5' -55.6 NC_002687.1 + 316162 0.67 0.967614
Target:  5'- gGCGCGGCGGAaa-AAGCAUCCg---- -3'
miRNA:   3'- -CGUGCCGCCUcacUUCGUGGGagaac -5'
10340 5' -55.6 NC_002687.1 + 268517 0.67 0.961326
Target:  5'- uGUACGGCgccGGAGaUGAcgAGCACCCa---- -3'
miRNA:   3'- -CGUGCCG---CCUC-ACU--UCGUGGGagaac -5'
10340 5' -55.6 NC_002687.1 + 158836 0.68 0.957884
Target:  5'- cGCgACGGCGGAGaUGAAGUugUCcaUUGu -3'
miRNA:   3'- -CG-UGCCGCCUC-ACUUCGugGGagAAC- -5'
10340 5' -55.6 NC_002687.1 + 170964 0.68 0.955721
Target:  5'- aGCACGGCuuGGuGUGuGAGCAgguccccuguauuucCCCUCUg- -3'
miRNA:   3'- -CGUGCCG--CCuCAC-UUCGU---------------GGGAGAac -5'
10340 5' -55.6 NC_002687.1 + 295695 0.68 0.953862
Target:  5'- aGCGCGGUgcagcggagcagcGGGGcUGAugccguGCACCCUCg-- -3'
miRNA:   3'- -CGUGCCG-------------CCUC-ACUu-----CGUGGGAGaac -5'
10340 5' -55.6 NC_002687.1 + 10727 0.68 0.949187
Target:  5'- uCACGGCGGAGaaGggGUGugguuccggccucgUCCUCUUGu -3'
miRNA:   3'- cGUGCCGCCUCa-CuuCGU--------------GGGAGAAC- -5'
10340 5' -55.6 NC_002687.1 + 269996 0.69 0.927915
Target:  5'- uGUACGGCgccGGAGaUGAcgAGCACCCgCUg- -3'
miRNA:   3'- -CGUGCCG---CCUC-ACU--UCGUGGGaGAac -5'
10340 5' -55.6 NC_002687.1 + 146256 0.7 0.893804
Target:  5'- cGCucuCGGCGGAGUGuGGaACCCUaCUUc -3'
miRNA:   3'- -CGu--GCCGCCUCACuUCgUGGGA-GAAc -5'
10340 5' -55.6 NC_002687.1 + 207834 0.7 0.893804
Target:  5'- -gACGGaCGGAGccUGGAGUGCCUUCUg- -3'
miRNA:   3'- cgUGCC-GCCUC--ACUUCGUGGGAGAac -5'
10340 5' -55.6 NC_002687.1 + 64154 0.7 0.887374
Target:  5'- aGCACGGUGaAGUGcAGCAuUCCUCUg- -3'
miRNA:   3'- -CGUGCCGCcUCACuUCGU-GGGAGAac -5'
10340 5' -55.6 NC_002687.1 + 296148 0.71 0.844636
Target:  5'- cCGCGGUGGAcgaagaguGUGAGGCcaagGCCCUCg-- -3'
miRNA:   3'- cGUGCCGCCU--------CACUUCG----UGGGAGaac -5'
10340 5' -55.6 NC_002687.1 + 141660 1.1 0.005983
Target:  5'- cGCACGGCGGAGUGAAGCACCCUCUUGu -3'
miRNA:   3'- -CGUGCCGCCUCACUUCGUGGGAGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.