miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10341 3' -56.4 NC_002687.1 + 173734 0.66 0.979897
Target:  5'- -gCAUCGGCGG-CUuguuguugugCUGCGCGGGUUa -3'
miRNA:   3'- agGUGGCUGCCaGA----------GACGUGCUCAGa -5'
10341 3' -56.4 NC_002687.1 + 250474 0.66 0.979897
Target:  5'- uUCCGUCGACGGUaUUCUGaCACGA-UCg -3'
miRNA:   3'- -AGGUGGCUGCCA-GAGAC-GUGCUcAGa -5'
10341 3' -56.4 NC_002687.1 + 7739 0.66 0.972983
Target:  5'- aUCugUGACcGUCUCUGCACcaaaccGGUCUg -3'
miRNA:   3'- aGGugGCUGcCAGAGACGUGc-----UCAGA- -5'
10341 3' -56.4 NC_002687.1 + 77382 0.67 0.961289
Target:  5'- uUCCACCGcuUGGUUUCUGCGCa----- -3'
miRNA:   3'- -AGGUGGCu-GCCAGAGACGUGcucaga -5'
10341 3' -56.4 NC_002687.1 + 262661 0.67 0.957186
Target:  5'- gCCACCaacaacgacgucGCGGcC-CUGCACGGGUCg -3'
miRNA:   3'- aGGUGGc-----------UGCCaGaGACGUGCUCAGa -5'
10341 3' -56.4 NC_002687.1 + 261604 0.67 0.953548
Target:  5'- cCCGCCGGCaagaugagCUGCAUGGGUCa -3'
miRNA:   3'- aGGUGGCUGccaga---GACGUGCUCAGa -5'
10341 3' -56.4 NC_002687.1 + 69985 0.68 0.928369
Target:  5'- gCCGCUGGCGG-CUCUG-GCG-GUCUu -3'
miRNA:   3'- aGGUGGCUGCCaGAGACgUGCuCAGA- -5'
10341 3' -56.4 NC_002687.1 + 148140 0.69 0.91804
Target:  5'- uUCCACCGACGGUaaagaacucgUCUGCACa----- -3'
miRNA:   3'- -AGGUGGCUGCCAg---------AGACGUGcucaga -5'
10341 3' -56.4 NC_002687.1 + 27196 0.69 0.91804
Target:  5'- gCCcCCGAcaCGGUCgcugagCgGCGCGAGUCg -3'
miRNA:   3'- aGGuGGCU--GCCAGa-----GaCGUGCUCAGa -5'
10341 3' -56.4 NC_002687.1 + 100819 0.7 0.880034
Target:  5'- aCCACuCGGCGGUCUuguuaucgguagccCUG-ACGGGUCg -3'
miRNA:   3'- aGGUG-GCUGCCAGA--------------GACgUGCUCAGa -5'
10341 3' -56.4 NC_002687.1 + 271466 0.73 0.75369
Target:  5'- cUCUugCGAUGGUCUCcuuauccUGCGCG-GUCa -3'
miRNA:   3'- -AGGugGCUGCCAGAG-------ACGUGCuCAGa -5'
10341 3' -56.4 NC_002687.1 + 144659 1.07 0.008193
Target:  5'- uUCCACCGACGGUCUCUGCACGAGUCUc -3'
miRNA:   3'- -AGGUGGCUGCCAGAGACGUGCUCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.