Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10341 | 3' | -56.4 | NC_002687.1 | + | 173734 | 0.66 | 0.979897 |
Target: 5'- -gCAUCGGCGG-CUuguuguugugCUGCGCGGGUUa -3' miRNA: 3'- agGUGGCUGCCaGA----------GACGUGCUCAGa -5' |
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10341 | 3' | -56.4 | NC_002687.1 | + | 250474 | 0.66 | 0.979897 |
Target: 5'- uUCCGUCGACGGUaUUCUGaCACGA-UCg -3' miRNA: 3'- -AGGUGGCUGCCA-GAGAC-GUGCUcAGa -5' |
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10341 | 3' | -56.4 | NC_002687.1 | + | 7739 | 0.66 | 0.972983 |
Target: 5'- aUCugUGACcGUCUCUGCACcaaaccGGUCUg -3' miRNA: 3'- aGGugGCUGcCAGAGACGUGc-----UCAGA- -5' |
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10341 | 3' | -56.4 | NC_002687.1 | + | 77382 | 0.67 | 0.961289 |
Target: 5'- uUCCACCGcuUGGUUUCUGCGCa----- -3' miRNA: 3'- -AGGUGGCu-GCCAGAGACGUGcucaga -5' |
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10341 | 3' | -56.4 | NC_002687.1 | + | 262661 | 0.67 | 0.957186 |
Target: 5'- gCCACCaacaacgacgucGCGGcC-CUGCACGGGUCg -3' miRNA: 3'- aGGUGGc-----------UGCCaGaGACGUGCUCAGa -5' |
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10341 | 3' | -56.4 | NC_002687.1 | + | 261604 | 0.67 | 0.953548 |
Target: 5'- cCCGCCGGCaagaugagCUGCAUGGGUCa -3' miRNA: 3'- aGGUGGCUGccaga---GACGUGCUCAGa -5' |
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10341 | 3' | -56.4 | NC_002687.1 | + | 69985 | 0.68 | 0.928369 |
Target: 5'- gCCGCUGGCGG-CUCUG-GCG-GUCUu -3' miRNA: 3'- aGGUGGCUGCCaGAGACgUGCuCAGA- -5' |
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10341 | 3' | -56.4 | NC_002687.1 | + | 148140 | 0.69 | 0.91804 |
Target: 5'- uUCCACCGACGGUaaagaacucgUCUGCACa----- -3' miRNA: 3'- -AGGUGGCUGCCAg---------AGACGUGcucaga -5' |
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10341 | 3' | -56.4 | NC_002687.1 | + | 27196 | 0.69 | 0.91804 |
Target: 5'- gCCcCCGAcaCGGUCgcugagCgGCGCGAGUCg -3' miRNA: 3'- aGGuGGCU--GCCAGa-----GaCGUGCUCAGa -5' |
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10341 | 3' | -56.4 | NC_002687.1 | + | 100819 | 0.7 | 0.880034 |
Target: 5'- aCCACuCGGCGGUCUuguuaucgguagccCUG-ACGGGUCg -3' miRNA: 3'- aGGUG-GCUGCCAGA--------------GACgUGCUCAGa -5' |
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10341 | 3' | -56.4 | NC_002687.1 | + | 271466 | 0.73 | 0.75369 |
Target: 5'- cUCUugCGAUGGUCUCcuuauccUGCGCG-GUCa -3' miRNA: 3'- -AGGugGCUGCCAGAG-------ACGUGCuCAGa -5' |
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10341 | 3' | -56.4 | NC_002687.1 | + | 144659 | 1.07 | 0.008193 |
Target: 5'- uUCCACCGACGGUCUCUGCACGAGUCUc -3' miRNA: 3'- -AGGUGGCUGCCAGAGACGUGCUCAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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