miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10341 5' -44 NC_002687.1 + 20517 0.66 1
Target:  5'- aCAAGACUCGUGCCUcccaaaagcaUgaaccuUGACCa----- -3'
miRNA:   3'- -GUUCUGAGUAUGGA----------A------ACUGGcaaaag -5'
10341 5' -44 NC_002687.1 + 312625 0.67 1
Target:  5'- gCGAGACUCGUAU---UGACagcaucaauugCGUUUUCg -3'
miRNA:   3'- -GUUCUGAGUAUGgaaACUG-----------GCAAAAG- -5'
10341 5' -44 NC_002687.1 + 224216 0.69 1
Target:  5'- cCGAG-CUCGUACUUUUG-CCGUg--- -3'
miRNA:   3'- -GUUCuGAGUAUGGAAACuGGCAaaag -5'
10341 5' -44 NC_002687.1 + 95273 0.67 1
Target:  5'- aCGAGACUCuccgGCCg--GAUCGUUc-- -3'
miRNA:   3'- -GUUCUGAGua--UGGaaaCUGGCAAaag -5'
10341 5' -44 NC_002687.1 + 84688 0.67 1
Target:  5'- -cGGACUCAgugAUCgucaUGGCCGUcgUCg -3'
miRNA:   3'- guUCUGAGUa--UGGaa--ACUGGCAaaAG- -5'
10341 5' -44 NC_002687.1 + 131995 0.67 1
Target:  5'- aCAAGACUCAcGCCUacauCCGUg--- -3'
miRNA:   3'- -GUUCUGAGUaUGGAaacuGGCAaaag -5'
10341 5' -44 NC_002687.1 + 123003 0.67 1
Target:  5'- aCGAG-CggaagCAUGCCguugUUGACCGUUc-- -3'
miRNA:   3'- -GUUCuGa----GUAUGGa---AACUGGCAAaag -5'
10341 5' -44 NC_002687.1 + 196352 0.66 1
Target:  5'- aCAAGACUCGUGCCUcccaaaagcaUgaaccuUGACCa----- -3'
miRNA:   3'- -GUUCUGAGUAUGGA----------A------ACUGGcaaaag -5'
10341 5' -44 NC_002687.1 + 96631 0.66 1
Target:  5'- gCAAGGCUUGUGCUcUUGuuCGUcgUCg -3'
miRNA:   3'- -GUUCUGAGUAUGGaAACugGCAaaAG- -5'
10341 5' -44 NC_002687.1 + 221943 0.66 1
Target:  5'- aCAAGACUCGUGCCUcccaaaagcaUgaaccuUGACCa----- -3'
miRNA:   3'- -GUUCUGAGUAUGGA----------A------ACUGGcaaaag -5'
10341 5' -44 NC_002687.1 + 332059 0.66 1
Target:  5'- gCAAGACcUGUGCCg--GAUCGUgggUCg -3'
miRNA:   3'- -GUUCUGaGUAUGGaaaCUGGCAaa-AG- -5'
10341 5' -44 NC_002687.1 + 145131 0.71 0.99999
Target:  5'- -cAGACaCAg--CUUUGACCGUUUUCa -3'
miRNA:   3'- guUCUGaGUaugGAAACUGGCAAAAG- -5'
10341 5' -44 NC_002687.1 + 144295 0.72 0.999975
Target:  5'- uCGAGACUCGUGCaga-GACCGUc--- -3'
miRNA:   3'- -GUUCUGAGUAUGgaaaCUGGCAaaag -5'
10341 5' -44 NC_002687.1 + 132662 0.72 0.999966
Target:  5'- aCAAGGCUCGUuuguagACCagUUGAaCGUUUUCg -3'
miRNA:   3'- -GUUCUGAGUA------UGGa-AACUgGCAAAAG- -5'
10341 5' -44 NC_002687.1 + 73288 0.72 0.999939
Target:  5'- cCAGGACUaCAUuucaaucuacGCCUUUG-UCGUUUUCa -3'
miRNA:   3'- -GUUCUGA-GUA----------UGGAAACuGGCAAAAG- -5'
10341 5' -44 NC_002687.1 + 147000 0.73 0.999823
Target:  5'- cUAAGAaacgaGUAgCUUUGACCGUUUUCc -3'
miRNA:   3'- -GUUCUgag--UAUgGAAACUGGCAAAAG- -5'
10341 5' -44 NC_002687.1 + 144624 1.13 0.05298
Target:  5'- aCAAGACUCAUACCUUUGACCGUUUUCa -3'
miRNA:   3'- -GUUCUGAGUAUGGAAACUGGCAAAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.