Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10341 | 5' | -44 | NC_002687.1 | + | 20517 | 0.66 | 1 |
Target: 5'- aCAAGACUCGUGCCUcccaaaagcaUgaaccuUGACCa----- -3' miRNA: 3'- -GUUCUGAGUAUGGA----------A------ACUGGcaaaag -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 312625 | 0.67 | 1 |
Target: 5'- gCGAGACUCGUAU---UGACagcaucaauugCGUUUUCg -3' miRNA: 3'- -GUUCUGAGUAUGgaaACUG-----------GCAAAAG- -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 224216 | 0.69 | 1 |
Target: 5'- cCGAG-CUCGUACUUUUG-CCGUg--- -3' miRNA: 3'- -GUUCuGAGUAUGGAAACuGGCAaaag -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 95273 | 0.67 | 1 |
Target: 5'- aCGAGACUCuccgGCCg--GAUCGUUc-- -3' miRNA: 3'- -GUUCUGAGua--UGGaaaCUGGCAAaag -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 84688 | 0.67 | 1 |
Target: 5'- -cGGACUCAgugAUCgucaUGGCCGUcgUCg -3' miRNA: 3'- guUCUGAGUa--UGGaa--ACUGGCAaaAG- -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 131995 | 0.67 | 1 |
Target: 5'- aCAAGACUCAcGCCUacauCCGUg--- -3' miRNA: 3'- -GUUCUGAGUaUGGAaacuGGCAaaag -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 123003 | 0.67 | 1 |
Target: 5'- aCGAG-CggaagCAUGCCguugUUGACCGUUc-- -3' miRNA: 3'- -GUUCuGa----GUAUGGa---AACUGGCAAaag -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 196352 | 0.66 | 1 |
Target: 5'- aCAAGACUCGUGCCUcccaaaagcaUgaaccuUGACCa----- -3' miRNA: 3'- -GUUCUGAGUAUGGA----------A------ACUGGcaaaag -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 96631 | 0.66 | 1 |
Target: 5'- gCAAGGCUUGUGCUcUUGuuCGUcgUCg -3' miRNA: 3'- -GUUCUGAGUAUGGaAACugGCAaaAG- -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 221943 | 0.66 | 1 |
Target: 5'- aCAAGACUCGUGCCUcccaaaagcaUgaaccuUGACCa----- -3' miRNA: 3'- -GUUCUGAGUAUGGA----------A------ACUGGcaaaag -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 332059 | 0.66 | 1 |
Target: 5'- gCAAGACcUGUGCCg--GAUCGUgggUCg -3' miRNA: 3'- -GUUCUGaGUAUGGaaaCUGGCAaa-AG- -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 145131 | 0.71 | 0.99999 |
Target: 5'- -cAGACaCAg--CUUUGACCGUUUUCa -3' miRNA: 3'- guUCUGaGUaugGAAACUGGCAAAAG- -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 144295 | 0.72 | 0.999975 |
Target: 5'- uCGAGACUCGUGCaga-GACCGUc--- -3' miRNA: 3'- -GUUCUGAGUAUGgaaaCUGGCAaaag -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 132662 | 0.72 | 0.999966 |
Target: 5'- aCAAGGCUCGUuuguagACCagUUGAaCGUUUUCg -3' miRNA: 3'- -GUUCUGAGUA------UGGa-AACUgGCAAAAG- -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 73288 | 0.72 | 0.999939 |
Target: 5'- cCAGGACUaCAUuucaaucuacGCCUUUG-UCGUUUUCa -3' miRNA: 3'- -GUUCUGA-GUA----------UGGAAACuGGCAAAAG- -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 147000 | 0.73 | 0.999823 |
Target: 5'- cUAAGAaacgaGUAgCUUUGACCGUUUUCc -3' miRNA: 3'- -GUUCUgag--UAUgGAAACUGGCAAAAG- -5' |
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10341 | 5' | -44 | NC_002687.1 | + | 144624 | 1.13 | 0.05298 |
Target: 5'- aCAAGACUCAUACCUUUGACCGUUUUCa -3' miRNA: 3'- -GUUCUGAGUAUGGAAACUGGCAAAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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