Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10342 | 5' | -51.8 | NC_002687.1 | + | 144802 | 0.67 | 0.995909 |
Target: 5'- uGCGAACGgagagGGUaAGACCGugGGUGgGCCCa -3' miRNA: 3'- -UGUUUGU-----UCG-UUUGGC--UCACgCGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 301950 | 0.67 | 0.995909 |
Target: 5'- -aGAACAGuCAAACagaGAGUGCucGCCCGc -3' miRNA: 3'- ugUUUGUUcGUUUGg--CUCACG--CGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 234749 | 0.68 | 0.995324 |
Target: 5'- cGCAAGCGAGCucgggcuuccauguGcucguggcguuucuuGGCCGAGUGgGCCUu -3' miRNA: 3'- -UGUUUGUUCG--------------U---------------UUGGCUCACgCGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 35784 | 0.68 | 0.994823 |
Target: 5'- aGCAAGCgAGGCAAaguGuagcuuagcguacauCCGAGUGCGCgCCc -3' miRNA: 3'- -UGUUUG-UUCGUU---U---------------GGCUCACGCG-GGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 41383 | 0.68 | 0.994517 |
Target: 5'- cGCGAGCc-GCAAGCCGugucgauguuGGUGUGCCg- -3' miRNA: 3'- -UGUUUGuuCGUUUGGC----------UCACGCGGgc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 202735 | 0.68 | 0.994517 |
Target: 5'- uACAAccGCGucGCGGACCGGGgggaagaacaGCGCCUGa -3' miRNA: 3'- -UGUU--UGUu-CGUUUGGCUCa---------CGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 202298 | 0.68 | 0.994517 |
Target: 5'- uACAAccGCGucGCGGACCGGGgggaagaacaGCGCCUGa -3' miRNA: 3'- -UGUU--UGUu-CGUUUGGCUCa---------CGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 168523 | 0.68 | 0.991736 |
Target: 5'- aGCAAACAGGCGAAUCGGuacUGCGaacugguaCCGu -3' miRNA: 3'- -UGUUUGUUCGUUUGGCUc--ACGCg-------GGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 146675 | 0.69 | 0.990594 |
Target: 5'- gGCGAGUggGUAGACCGucGGUGgGUCCa -3' miRNA: 3'- -UGUUUGuuCGUUUGGC--UCACgCGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 307429 | 0.69 | 0.990594 |
Target: 5'- cGCAGGgAuacGGC--GCCGcGUGCGCCCa -3' miRNA: 3'- -UGUUUgU---UCGuuUGGCuCACGCGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 139442 | 0.69 | 0.990594 |
Target: 5'- gACAAcguCAAcGCAuGCCGGGUGCgGUCCa -3' miRNA: 3'- -UGUUu--GUU-CGUuUGGCUCACG-CGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 238670 | 0.69 | 0.990351 |
Target: 5'- cGCcGACAAGCGucgGGCCGAGaucggagccaggGUGCCCu -3' miRNA: 3'- -UGuUUGUUCGU---UUGGCUCa-----------CGCGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 194488 | 0.69 | 0.987941 |
Target: 5'- aGCGGgcGCAGGCGGACgGcguugacagcAGUGCGCUCa -3' miRNA: 3'- -UGUU--UGUUCGUUUGgC----------UCACGCGGGc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 55572 | 0.69 | 0.987941 |
Target: 5'- gACGAACAguagucgauGGCcuuGGCCGGGUugGUGCCUGg -3' miRNA: 3'- -UGUUUGU---------UCGu--UUGGCUCA--CGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 49930 | 0.69 | 0.986414 |
Target: 5'- uGC-AACAAGUuGGCaGAGUGUGCCUGu -3' miRNA: 3'- -UGuUUGUUCGuUUGgCUCACGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 305378 | 0.69 | 0.986414 |
Target: 5'- gGCAAaggGCAAGCAGACCGAaucCGCCa- -3' miRNA: 3'- -UGUU---UGUUCGUUUGGCUcacGCGGgc -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 329760 | 0.69 | 0.986414 |
Target: 5'- uGCGAACAcgaucgcuGCugcGCCGAGgcGUGCCCGg -3' miRNA: 3'- -UGUUUGUu-------CGuu-UGGCUCa-CGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 50816 | 0.69 | 0.986414 |
Target: 5'- uGC-AACAAGUuGGCaGAGUGUGCCUGu -3' miRNA: 3'- -UGuUUGUUCGuUUGgCUCACGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 154472 | 0.7 | 0.980935 |
Target: 5'- aACGGACGAGguuCGAACCGAagggguacaggGUGCGUCUGc -3' miRNA: 3'- -UGUUUGUUC---GUUUGGCU-----------CACGCGGGC- -5' |
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10342 | 5' | -51.8 | NC_002687.1 | + | 155230 | 0.7 | 0.973953 |
Target: 5'- -uGAACcGGCAGGCgGAGuUGUGCUCGg -3' miRNA: 3'- ugUUUGuUCGUUUGgCUC-ACGCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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