Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10343 | 3' | -57.8 | NC_002687.1 | + | 147033 | 1.11 | 0.004107 |
Target: 5'- cCCACCGACGGUCUACCCACUCGCCUCu -3' miRNA: 3'- -GGUGGCUGCCAGAUGGGUGAGCGGAG- -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 78275 | 0.75 | 0.597118 |
Target: 5'- cUCGCCGAUGccagCUuCCCAUUCGCCUCc -3' miRNA: 3'- -GGUGGCUGCca--GAuGGGUGAGCGGAG- -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 117618 | 0.74 | 0.606588 |
Target: 5'- aCACCGugGGUCccaACCCGuucaCGCCUCu -3' miRNA: 3'- gGUGGCugCCAGa--UGGGUga--GCGGAG- -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 144658 | 0.74 | 0.62557 |
Target: 5'- uCCACCGACGGUCUcUgCACgaGUCUCg -3' miRNA: 3'- -GGUGGCUGCCAGAuGgGUGagCGGAG- -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 47066 | 0.72 | 0.719682 |
Target: 5'- -aACCGAUGGUUUaACCUACgUGCCUCc -3' miRNA: 3'- ggUGGCUGCCAGA-UGGGUGaGCGGAG- -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 242784 | 0.72 | 0.74698 |
Target: 5'- gCCugUGGCGaUUUugCCGCUCGCCa- -3' miRNA: 3'- -GGugGCUGCcAGAugGGUGAGCGGag -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 308269 | 0.7 | 0.815424 |
Target: 5'- aCCACCccaGACcaGGUCUcUCCGCgCGCCUCc -3' miRNA: 3'- -GGUGG---CUG--CCAGAuGGGUGaGCGGAG- -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 17831 | 0.7 | 0.838914 |
Target: 5'- aCGCCGcCGGgCUGCCUucuacaccaaaGCUCGgCCUCu -3' miRNA: 3'- gGUGGCuGCCaGAUGGG-----------UGAGC-GGAG- -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 19968 | 0.7 | 0.846428 |
Target: 5'- aCACUG-CGGUgCUACCCAUUUGCUc- -3' miRNA: 3'- gGUGGCuGCCA-GAUGGGUGAGCGGag -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 221394 | 0.7 | 0.846428 |
Target: 5'- aCACUG-CGGUgCUACCCAUUUGCUc- -3' miRNA: 3'- gGUGGCuGCCA-GAUGGGUGAGCGGag -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 195803 | 0.7 | 0.846428 |
Target: 5'- aCACUG-CGGUgCUACCCAUUUGCUc- -3' miRNA: 3'- gGUGGCuGCCA-GAUGGGUGAGCGGag -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 85728 | 0.69 | 0.860947 |
Target: 5'- cCCGCUGGCcccgCUGgcCCCGCUgGCCUCg -3' miRNA: 3'- -GGUGGCUGcca-GAU--GGGUGAgCGGAG- -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 147702 | 0.69 | 0.861655 |
Target: 5'- cCCACCGGgGGUCgacgcaguacguauaGCCUugUCGUCgUCg -3' miRNA: 3'- -GGUGGCUgCCAGa--------------UGGGugAGCGG-AG- -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 313593 | 0.69 | 0.867943 |
Target: 5'- -aGCCGACGGUCgaagUCCACUCuCCg- -3' miRNA: 3'- ggUGGCUGCCAGau--GGGUGAGcGGag -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 148141 | 0.69 | 0.881381 |
Target: 5'- uCCACCGACGGUaaaga-ACUCGUCUg -3' miRNA: 3'- -GGUGGCUGCCAgaugggUGAGCGGAg -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 41608 | 0.68 | 0.905942 |
Target: 5'- uCCuCCGACGaaGcCUACCCGCUccCGCCa- -3' miRNA: 3'- -GGuGGCUGC--CaGAUGGGUGA--GCGGag -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 299371 | 0.68 | 0.91541 |
Target: 5'- aCCAUCGACccggagacgGGUCUGCUCACUCaaccccgaaguguaGCC-Cg -3' miRNA: 3'- -GGUGGCUG---------CCAGAUGGGUGAG--------------CGGaG- -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 110429 | 0.67 | 0.927277 |
Target: 5'- aCACaCGACa-UCUACgCACUCGCCg- -3' miRNA: 3'- gGUG-GCUGccAGAUGgGUGAGCGGag -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 87780 | 0.67 | 0.932097 |
Target: 5'- gCACCGGCaucugguagccGGgCUGCUgACUCGgCCUCu -3' miRNA: 3'- gGUGGCUG-----------CCaGAUGGgUGAGC-GGAG- -5' |
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10343 | 3' | -57.8 | NC_002687.1 | + | 80968 | 0.67 | 0.932097 |
Target: 5'- aCCACCGccAUGG-C-ACCCuuggACUCGCCUa -3' miRNA: 3'- -GGUGGC--UGCCaGaUGGG----UGAGCGGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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