miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10346 5' -55 NC_002687.1 + 41885 0.66 0.990445
Target:  5'- cGUGCGcaACACCAacaucgacacggcuuGCGGCUCgGgcuucuCCAGCAc -3'
miRNA:   3'- -CAUGC--UGUGGU---------------UGCUGAGgC------GGUCGU- -5'
10346 5' -55 NC_002687.1 + 296554 0.66 0.989961
Target:  5'- -cACGuCGCCAGCGuuguCUCCuCCGGUc -3'
miRNA:   3'- caUGCuGUGGUUGCu---GAGGcGGUCGu -5'
10346 5' -55 NC_002687.1 + 90678 0.66 0.989961
Target:  5'- -cGCGACGUCGACcACUuuGCaCGGCAg -3'
miRNA:   3'- caUGCUGUGGUUGcUGAggCG-GUCGU- -5'
10346 5' -55 NC_002687.1 + 41300 0.66 0.989961
Target:  5'- --uCGACAgCCAACGGCuUuuGCCGGa- -3'
miRNA:   3'- cauGCUGU-GGUUGCUG-AggCGGUCgu -5'
10346 5' -55 NC_002687.1 + 137167 0.66 0.989961
Target:  5'- -aGCGACACC---GAUUCCGCCGa-- -3'
miRNA:   3'- caUGCUGUGGuugCUGAGGCGGUcgu -5'
10346 5' -55 NC_002687.1 + 83370 0.66 0.989961
Target:  5'- -aGCGAggguguCGCCGACGACaCCGUCGGa- -3'
miRNA:   3'- caUGCU------GUGGUUGCUGaGGCGGUCgu -5'
10346 5' -55 NC_002687.1 + 39402 0.66 0.989961
Target:  5'- -gGCGACAUgAGCGuggcCUUCGCgGGCu -3'
miRNA:   3'- caUGCUGUGgUUGCu---GAGGCGgUCGu -5'
10346 5' -55 NC_002687.1 + 225655 0.66 0.989961
Target:  5'- uGUGuCGACACCuccuGCGAguCUCCGUCAaGUu -3'
miRNA:   3'- -CAU-GCUGUGGu---UGCU--GAGGCGGU-CGu -5'
10346 5' -55 NC_002687.1 + 200772 0.66 0.989961
Target:  5'- -cACGGCAUCGG-GACaUCCGgCGGCGu -3'
miRNA:   3'- caUGCUGUGGUUgCUG-AGGCgGUCGU- -5'
10346 5' -55 NC_002687.1 + 165271 0.66 0.989586
Target:  5'- -gACGAgGCUcACGACUCCGacggacgauacguuCCAGUg -3'
miRNA:   3'- caUGCUgUGGuUGCUGAGGC--------------GGUCGu -5'
10346 5' -55 NC_002687.1 + 72922 0.66 0.988669
Target:  5'- uGUGcCGACGCCGccgccgcCGACacaCCGCCgAGCAg -3'
miRNA:   3'- -CAU-GCUGUGGUu------GCUGa--GGCGG-UCGU- -5'
10346 5' -55 NC_002687.1 + 325511 0.66 0.988669
Target:  5'- gGUACGGCGguaCAGgcCGGC-CaCGCCAGCAa -3'
miRNA:   3'- -CAUGCUGUg--GUU--GCUGaG-GCGGUCGU- -5'
10346 5' -55 NC_002687.1 + 46310 0.66 0.988669
Target:  5'- cUGCGACACCAGCuGCaaUCCaucUCAGCGa -3'
miRNA:   3'- cAUGCUGUGGUUGcUG--AGGc--GGUCGU- -5'
10346 5' -55 NC_002687.1 + 27942 0.66 0.988669
Target:  5'- uUACGGCggACCAaggaaggcACGACUCUGaCCAGg- -3'
miRNA:   3'- cAUGCUG--UGGU--------UGCUGAGGC-GGUCgu -5'
10346 5' -55 NC_002687.1 + 181566 0.66 0.988669
Target:  5'- aUGCG-CGCCAuuuccuucuUGGCUuuGCCGGCu -3'
miRNA:   3'- cAUGCuGUGGUu--------GCUGAggCGGUCGu -5'
10346 5' -55 NC_002687.1 + 84325 0.66 0.988532
Target:  5'- -gACGACgGCCAugACGAUcacugagUCCGCC-GCAa -3'
miRNA:   3'- caUGCUG-UGGU--UGCUG-------AGGCGGuCGU- -5'
10346 5' -55 NC_002687.1 + 65202 0.66 0.98725
Target:  5'- ---gGACACCGGCGACg--GCaCGGCAu -3'
miRNA:   3'- caugCUGUGGUUGCUGaggCG-GUCGU- -5'
10346 5' -55 NC_002687.1 + 238653 0.66 0.98725
Target:  5'- -aACcGgACC-AUGACUCCGCCAuGCGg -3'
miRNA:   3'- caUGcUgUGGuUGCUGAGGCGGU-CGU- -5'
10346 5' -55 NC_002687.1 + 227585 0.66 0.98725
Target:  5'- -cGCGGCuACCGucCGAC-CUGCCGGUg -3'
miRNA:   3'- caUGCUG-UGGUu-GCUGaGGCGGUCGu -5'
10346 5' -55 NC_002687.1 + 224842 0.66 0.98725
Target:  5'- -gACGAucggagagcCGCCGacGCGGCggCGCCGGCAc -3'
miRNA:   3'- caUGCU---------GUGGU--UGCUGagGCGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.