miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10349 5' -53.8 NC_002687.1 + 234673 0.67 0.992422
Target:  5'- gAUGaucaaaAUGAGGACaGGcCGAUGACGCccgaGCa -3'
miRNA:   3'- -UACg-----UGCUUCUG-CCaGCUACUGCG----CG- -5'
10349 5' -53.8 NC_002687.1 + 239687 0.66 0.994207
Target:  5'- gGUGUACGAccAGcACGGUCca-GACGcCGCc -3'
miRNA:   3'- -UACGUGCU--UC-UGCCAGcuaCUGC-GCG- -5'
10349 5' -53.8 NC_002687.1 + 241957 0.66 0.994963
Target:  5'- cUGCACGGggcaAGAgGGUgCGAgaggGGCGUGg -3'
miRNA:   3'- uACGUGCU----UCUgCCA-GCUa---CUGCGCg -5'
10349 5' -53.8 NC_002687.1 + 243501 0.7 0.946915
Target:  5'- -aGCAUGGgguggcGGACGGaUCGAccACGCGCu -3'
miRNA:   3'- uaCGUGCU------UCUGCC-AGCUacUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 244053 0.66 0.993363
Target:  5'- cUGUGCGAGGuCGGU-GGUGcCGCGa -3'
miRNA:   3'- uACGUGCUUCuGCCAgCUACuGCGCg -5'
10349 5' -53.8 NC_002687.1 + 249878 0.66 0.996063
Target:  5'- cUGgACGAAGACcaaGGcCGAUcuucaaaaauacggGAUGCGCa -3'
miRNA:   3'- uACgUGCUUCUG---CCaGCUA--------------CUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 259265 0.67 0.992422
Target:  5'- --cCACGAGGAuCGGgcaaGAUGACGCu- -3'
miRNA:   3'- uacGUGCUUCU-GCCag--CUACUGCGcg -5'
10349 5' -53.8 NC_002687.1 + 267829 0.67 0.988955
Target:  5'- gGUGgAC--AGGCGGUCGucuGUGgaGCGCGCg -3'
miRNA:   3'- -UACgUGcuUCUGCCAGC---UAC--UGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 275453 0.67 0.991379
Target:  5'- uUGUACGcGAGcUGGUCGA--GCGCGUg -3'
miRNA:   3'- uACGUGC-UUCuGCCAGCUacUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 295700 0.68 0.978444
Target:  5'- gGUGCAgCGGAGcaGCGGggcUGAUGcCGUGCa -3'
miRNA:   3'- -UACGU-GCUUC--UGCCa--GCUACuGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 301006 0.66 0.993963
Target:  5'- -gGCGuCGGauAGGCGGUCGAacgguaccccgcugUGGuuuCGCGCa -3'
miRNA:   3'- uaCGU-GCU--UCUGCCAGCU--------------ACU---GCGCG- -5'
10349 5' -53.8 NC_002687.1 + 303907 0.66 0.995636
Target:  5'- -aGCuGCGAAGACGGgcccaGAUgcGACGUGg -3'
miRNA:   3'- uaCG-UGCUUCUGCCag---CUA--CUGCGCg -5'
10349 5' -53.8 NC_002687.1 + 307814 0.69 0.961907
Target:  5'- cUG-AUGggGACGG-CGGUGACG-GCg -3'
miRNA:   3'- uACgUGCuuCUGCCaGCUACUGCgCG- -5'
10349 5' -53.8 NC_002687.1 + 308631 0.66 0.994207
Target:  5'- -cGCGCGGAGAgaccUGGUCugggguGGUGAgGgGCg -3'
miRNA:   3'- uaCGUGCUUCU----GCCAG------CUACUgCgCG- -5'
10349 5' -53.8 NC_002687.1 + 310843 0.65 0.996714
Target:  5'- cGUGCGCGcAGAauuuggcagcgaaUGGUCcggGGCGCGUg -3'
miRNA:   3'- -UACGUGCuUCU-------------GCCAGcuaCUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 329777 0.66 0.994963
Target:  5'- cUGCGCcGAGGCGuGccCGGUGGCGUGg -3'
miRNA:   3'- uACGUGcUUCUGC-Ca-GCUACUGCGCg -5'
10349 5' -53.8 NC_002687.1 + 329985 0.75 0.763149
Target:  5'- gGUGCGCgugggagacccugguGAAGAUGcGUCGAUGGCGCaaGCa -3'
miRNA:   3'- -UACGUG---------------CUUCUGC-CAGCUACUGCG--CG- -5'
10349 5' -53.8 NC_002687.1 + 333702 0.67 0.991809
Target:  5'- -cGCACGGAGgccACGugccauauucuugguGUCGA-GGCGCGUa -3'
miRNA:   3'- uaCGUGCUUC---UGC---------------CAGCUaCUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.