Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 118269 | 0.67 | 0.990226 |
Target: 5'- -gGUAgGAAGACGa-CGGUGcCGCGCc -3' miRNA: 3'- uaCGUgCUUCUGCcaGCUACuGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 118185 | 0.68 | 0.98603 |
Target: 5'- cUGCgucgaACGAGGACGa-CGGUGcCGCGCc -3' miRNA: 3'- uACG-----UGCUUCUGCcaGCUACuGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 115951 | 0.66 | 0.995636 |
Target: 5'- uUGCGgGAAGACGGUCuGUGuugauaucuUGUGUa -3' miRNA: 3'- uACGUgCUUCUGCCAGcUACu--------GCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 107543 | 0.68 | 0.984187 |
Target: 5'- -cGCAUGAacguucccaucaaGGugGcucUCGGUGGCGUGCg -3' miRNA: 3'- uaCGUGCU-------------UCugCc--AGCUACUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 103294 | 0.66 | 0.996178 |
Target: 5'- -aGgACGAGGACcuGGUCGcgGACGaauccuuCGCc -3' miRNA: 3'- uaCgUGCUUCUG--CCAGCuaCUGC-------GCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 97602 | 0.67 | 0.992422 |
Target: 5'- gGUGCugGGgauGACGccguacagUGAUGACGUGCc -3' miRNA: 3'- -UACGugCUu--CUGCca------GCUACUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 84838 | 0.66 | 0.996235 |
Target: 5'- cGUGCguugugGCGuuguAGGCgaGGUCGAUcucuuuguccucGACGCGCa -3' miRNA: 3'- -UACG------UGCu---UCUG--CCAGCUA------------CUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 80484 | 0.76 | 0.722038 |
Target: 5'- uUGUGCGcuGAUGGUCGucgauccUGACGCGCa -3' miRNA: 3'- uACGUGCuuCUGCCAGCu------ACUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 79624 | 0.7 | 0.942634 |
Target: 5'- gGUGUugGAuGA-GGcCGAcgUGACGCGCa -3' miRNA: 3'- -UACGugCUuCUgCCaGCU--ACUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 78418 | 0.66 | 0.996235 |
Target: 5'- -aGCAcCGAGGcCGGUCacggguuUGAgGCGCu -3' miRNA: 3'- uaCGU-GCUUCuGCCAGcu-----ACUgCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 76958 | 0.68 | 0.980576 |
Target: 5'- -aGCACGAGGcACGG-C-AUGuACGUGCg -3' miRNA: 3'- uaCGUGCUUC-UGCCaGcUAC-UGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 76918 | 0.74 | 0.803891 |
Target: 5'- gAUGCGCGAAGACuGUCGGUGAUugaaaCGUu -3' miRNA: 3'- -UACGUGCUUCUGcCAGCUACUGc----GCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 73340 | 0.67 | 0.990226 |
Target: 5'- uAUGCucCGGAGACGGU-GAcGGCGacaGCa -3' miRNA: 3'- -UACGu-GCUUCUGCCAgCUaCUGCg--CG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 58117 | 0.68 | 0.98603 |
Target: 5'- -aGU-CGAGGGCGGcCGA--GCGCGCc -3' miRNA: 3'- uaCGuGCUUCUGCCaGCUacUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 42304 | 0.67 | 0.988955 |
Target: 5'- gAUGUugGAgGGAUGGUCGGU--CGCaGCg -3' miRNA: 3'- -UACGugCU-UCUGCCAGCUAcuGCG-CG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 27958 | 0.72 | 0.906505 |
Target: 5'- uGUGCGCGAuGAUGGUacUGGUGACgGUGUu -3' miRNA: 3'- -UACGUGCUuCUGCCA--GCUACUG-CGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 24496 | 0.69 | 0.971015 |
Target: 5'- -cGCGCGAcccuuccaccaAGGCGGcCaaGUGAUGCGCu -3' miRNA: 3'- uaCGUGCU-----------UCUGCCaGc-UACUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 18323 | 0.68 | 0.980576 |
Target: 5'- cUGCuuCGggGGCGGgCGGUGAUGacaGUg -3' miRNA: 3'- uACGu-GCuuCUGCCaGCUACUGCg--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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