Results 21 - 40 of 58 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 151378 | 0.66 | 0.994207 |
Target: 5'- -cGCAUGGAaaACGGUCGAUGgACGUu- -3' miRNA: 3'- uaCGUGCUUc-UGCCAGCUAC-UGCGcg -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 308631 | 0.66 | 0.994207 |
Target: 5'- -cGCGCGGAGAgaccUGGUCugggguGGUGAgGgGCg -3' miRNA: 3'- uaCGUGCUUCU----GCCAG------CUACUgCgCG- -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 301006 | 0.66 | 0.993963 |
Target: 5'- -gGCGuCGGauAGGCGGUCGAacgguaccccgcugUGGuuuCGCGCa -3' miRNA: 3'- uaCGU-GCU--UCUGCCAGCU--------------ACU---GCGCG- -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 168800 | 0.66 | 0.993363 |
Target: 5'- uUGCAUuu-GAUGGUCGc--GCGCGCa -3' miRNA: 3'- uACGUGcuuCUGCCAGCuacUGCGCG- -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 244053 | 0.66 | 0.993363 |
Target: 5'- cUGUGCGAGGuCGGU-GGUGcCGCGa -3' miRNA: 3'- uACGUGCUUCuGCCAgCUACuGCGCg -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 184823 | 0.67 | 0.992422 |
Target: 5'- -gGCAUGGAGAUGGUa-GUG-CGCGa -3' miRNA: 3'- uaCGUGCUUCUGCCAgcUACuGCGCg -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 333702 | 0.67 | 0.991809 |
Target: 5'- -cGCACGGAGgccACGugccauauucuugguGUCGA-GGCGCGUa -3' miRNA: 3'- uaCGUGCUUC---UGC---------------CAGCUaCUGCGCG- -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 118269 | 0.67 | 0.990226 |
Target: 5'- -gGUAgGAAGACGa-CGGUGcCGCGCc -3' miRNA: 3'- uaCGUgCUUCUGCcaGCUACuGCGCG- -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 24496 | 0.69 | 0.971015 |
Target: 5'- -cGCGCGAcccuuccaccaAGGCGGcCaaGUGAUGCGCu -3' miRNA: 3'- uaCGUGCU-----------UCUGCCaGc-UACUGCGCG- -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 119445 | 0.68 | 0.975905 |
Target: 5'- -aGCAguaacgacacacuCGAAGACGcGUCGGUGAUGguguCGCu -3' miRNA: 3'- uaCGU-------------GCUUCUGC-CAGCUACUGC----GCG- -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 295700 | 0.68 | 0.978444 |
Target: 5'- gGUGCAgCGGAGcaGCGGggcUGAUGcCGUGCa -3' miRNA: 3'- -UACGU-GCUUC--UGCCa--GCUACuGCGCG- -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 18323 | 0.68 | 0.980576 |
Target: 5'- cUGCuuCGggGGCGGgCGGUGAUGacaGUg -3' miRNA: 3'- uACGu-GCuuCUGCCaGCUACUGCg--CG- -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 223489 | 0.68 | 0.980576 |
Target: 5'- gAUGCggugGCGggGGCGGgggaagccgUGGUGGCGacaGCa -3' miRNA: 3'- -UACG----UGCuuCUGCCa--------GCUACUGCg--CG- -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 224189 | 0.69 | 0.968173 |
Target: 5'- aGUGCugGu-GGCGGUgGcgGugGCGg -3' miRNA: 3'- -UACGugCuuCUGCCAgCuaCugCGCg -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 224093 | 0.69 | 0.965139 |
Target: 5'- gGUGCugGcGGACGuUCGG-GACGCGg -3' miRNA: 3'- -UACGugCuUCUGCcAGCUaCUGCGCg -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 224128 | 0.7 | 0.946915 |
Target: 5'- -cGCugGcgcuGGCGGUgGcgGugGCGCu -3' miRNA: 3'- uaCGugCuu--CUGCCAgCuaCugCGCG- -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 243501 | 0.7 | 0.946915 |
Target: 5'- -aGCAUGGgguggcGGACGGaUCGAccACGCGCu -3' miRNA: 3'- uaCGUGCU------UCUGCC-AGCUacUGCGCG- -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 173620 | 0.7 | 0.942634 |
Target: 5'- -gGCggagGCGggGGCGGagGcgGACGCGg -3' miRNA: 3'- uaCG----UGCuuCUGCCagCuaCUGCGCg -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 27958 | 0.72 | 0.906505 |
Target: 5'- uGUGCGCGAuGAUGGUacUGGUGACgGUGUu -3' miRNA: 3'- -UACGUGCUuCUGCCA--GCUACUG-CGCG- -5' |
|||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 310843 | 0.65 | 0.996714 |
Target: 5'- cGUGCGCGcAGAauuuggcagcgaaUGGUCcggGGCGCGUg -3' miRNA: 3'- -UACGUGCuUCU-------------GCCAGcuaCUGCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home