miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10349 5' -53.8 NC_002687.1 + 97602 0.67 0.992422
Target:  5'- gGUGCugGGgauGACGccguacagUGAUGACGUGCc -3'
miRNA:   3'- -UACGugCUu--CUGCca------GCUACUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 184823 0.67 0.992422
Target:  5'- -gGCAUGGAGAUGGUa-GUG-CGCGa -3'
miRNA:   3'- uaCGUGCUUCUGCCAgcUACuGCGCg -5'
10349 5' -53.8 NC_002687.1 + 333702 0.67 0.991809
Target:  5'- -cGCACGGAGgccACGugccauauucuugguGUCGA-GGCGCGUa -3'
miRNA:   3'- uaCGUGCUUC---UGC---------------CAGCUaCUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 275453 0.67 0.991379
Target:  5'- uUGUACGcGAGcUGGUCGA--GCGCGUg -3'
miRNA:   3'- uACGUGC-UUCuGCCAGCUacUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 118269 0.67 0.990226
Target:  5'- -gGUAgGAAGACGa-CGGUGcCGCGCc -3'
miRNA:   3'- uaCGUgCUUCUGCcaGCUACuGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 73340 0.67 0.990226
Target:  5'- uAUGCucCGGAGACGGU-GAcGGCGacaGCa -3'
miRNA:   3'- -UACGu-GCUUCUGCCAgCUaCUGCg--CG- -5'
10349 5' -53.8 NC_002687.1 + 214997 0.67 0.988955
Target:  5'- --aCACGGagAGACGuGUCucgcuGAUGugGCGCu -3'
miRNA:   3'- uacGUGCU--UCUGC-CAG-----CUACugCGCG- -5'
10349 5' -53.8 NC_002687.1 + 206830 0.67 0.988955
Target:  5'- uGUGC-CGGAGACGGUggCGAaGAgGCcaGCa -3'
miRNA:   3'- -UACGuGCUUCUGCCA--GCUaCUgCG--CG- -5'
10349 5' -53.8 NC_002687.1 + 42304 0.67 0.988955
Target:  5'- gAUGUugGAgGGAUGGUCGGU--CGCaGCg -3'
miRNA:   3'- -UACGugCU-UCUGCCAGCUAcuGCG-CG- -5'
10349 5' -53.8 NC_002687.1 + 267829 0.67 0.988955
Target:  5'- gGUGgAC--AGGCGGUCGucuGUGgaGCGCGCg -3'
miRNA:   3'- -UACgUGcuUCUGCCAGC---UAC--UGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 139769 0.67 0.988955
Target:  5'- aAUGCgGCGAgguauacccacAGugGGUCGAUcGACGUa- -3'
miRNA:   3'- -UACG-UGCU-----------UCugCCAGCUA-CUGCGcg -5'
10349 5' -53.8 NC_002687.1 + 58117 0.68 0.98603
Target:  5'- -aGU-CGAGGGCGGcCGA--GCGCGCc -3'
miRNA:   3'- uaCGuGCUUCUGCCaGCUacUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 118185 0.68 0.98603
Target:  5'- cUGCgucgaACGAGGACGa-CGGUGcCGCGCc -3'
miRNA:   3'- uACG-----UGCUUCUGCcaGCUACuGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 232352 0.68 0.98603
Target:  5'- cAUGCACGAGGcuucaCGcgGAUGCGCg -3'
miRNA:   3'- -UACGUGCUUCugccaGCuaCUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 226808 0.68 0.984361
Target:  5'- gGUGC-CGguGGCGGUgGcgGugGCGg -3'
miRNA:   3'- -UACGuGCuuCUGCCAgCuaCugCGCg -5'
10349 5' -53.8 NC_002687.1 + 107543 0.68 0.984187
Target:  5'- -cGCAUGAacguucccaucaaGGugGcucUCGGUGGCGUGCg -3'
miRNA:   3'- uaCGUGCU-------------UCugCc--AGCUACUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 153467 0.68 0.982546
Target:  5'- uUGaACG-AGACGGcgCGGagUGGCGCGCu -3'
miRNA:   3'- uACgUGCuUCUGCCa-GCU--ACUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 18323 0.68 0.980576
Target:  5'- cUGCuuCGggGGCGGgCGGUGAUGacaGUg -3'
miRNA:   3'- uACGu-GCuuCUGCCaGCUACUGCg--CG- -5'
10349 5' -53.8 NC_002687.1 + 223489 0.68 0.980576
Target:  5'- gAUGCggugGCGggGGCGGgggaagccgUGGUGGCGacaGCa -3'
miRNA:   3'- -UACG----UGCuuCUGCCa--------GCUACUGCg--CG- -5'
10349 5' -53.8 NC_002687.1 + 76958 0.68 0.980576
Target:  5'- -aGCACGAGGcACGG-C-AUGuACGUGCg -3'
miRNA:   3'- uaCGUGCUUC-UGCCaGcUAC-UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.