miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10350 3' -58.4 NC_002687.1 + 169432 0.66 0.956739
Target:  5'- aUCGU--GAGGgCCGACc-UGUCGCGAu -3'
miRNA:   3'- -AGCAacCUCCgGGCUGcaACGGCGCU- -5'
10350 3' -58.4 NC_002687.1 + 43417 0.66 0.956739
Target:  5'- gUCGggGGAGGCUCu-UGUUGUaCGCGu -3'
miRNA:   3'- -AGCaaCCUCCGGGcuGCAACG-GCGCu -5'
10350 3' -58.4 NC_002687.1 + 216050 0.66 0.949329
Target:  5'- gUCGUUGGAaaacauggacgGGCcugcgCCGAUGUUcaGCCGCu- -3'
miRNA:   3'- -AGCAACCU-----------CCG-----GGCUGCAA--CGGCGcu -5'
10350 3' -58.4 NC_002687.1 + 96345 0.66 0.945325
Target:  5'- cUCG-UGGAucGGUUCGAgGUUGCuCGCGu -3'
miRNA:   3'- -AGCaACCU--CCGGGCUgCAACG-GCGCu -5'
10350 3' -58.4 NC_002687.1 + 59459 0.67 0.932097
Target:  5'- cCGuUUGGAGGCUgGugGUUaccauacucaCCGCGAc -3'
miRNA:   3'- aGC-AACCUCCGGgCugCAAc---------GGCGCU- -5'
10350 3' -58.4 NC_002687.1 + 200108 0.67 0.922251
Target:  5'- cUCGUUGGu-GCCggCGACGacgGCCGCGc -3'
miRNA:   3'- -AGCAACCucCGG--GCUGCaa-CGGCGCu -5'
10350 3' -58.4 NC_002687.1 + 121166 0.67 0.91702
Target:  5'- -gGUUGGguuuugaaAGGaCCCGcUGUUGUCGCGGa -3'
miRNA:   3'- agCAACC--------UCC-GGGCuGCAACGGCGCU- -5'
10350 3' -58.4 NC_002687.1 + 184084 0.67 0.91702
Target:  5'- gCGgcGGuAGGUCaCGACGggGUCGCGu -3'
miRNA:   3'- aGCaaCC-UCCGG-GCUGCaaCGGCGCu -5'
10350 3' -58.4 NC_002687.1 + 280953 0.67 0.911583
Target:  5'- gUCGgcGGGGGCCUGgguggcggcaGCGgcgGCCGgGGu -3'
miRNA:   3'- -AGCaaCCUCCGGGC----------UGCaa-CGGCgCU- -5'
10350 3' -58.4 NC_002687.1 + 83875 0.67 0.911583
Target:  5'- --uUUGGGGGCCuCGAUugUGCCGuCGGu -3'
miRNA:   3'- agcAACCUCCGG-GCUGcaACGGC-GCU- -5'
10350 3' -58.4 NC_002687.1 + 244051 0.67 0.911583
Target:  5'- ---gUGcGAGGUCgGugG-UGCCGCGAg -3'
miRNA:   3'- agcaAC-CUCCGGgCugCaACGGCGCU- -5'
10350 3' -58.4 NC_002687.1 + 238679 0.67 0.911583
Target:  5'- aUCGUUcGGuGGGCcaCCGACGcUGCgCGUGAa -3'
miRNA:   3'- -AGCAA-CC-UCCG--GGCUGCaACG-GCGCU- -5'
10350 3' -58.4 NC_002687.1 + 63046 0.68 0.900099
Target:  5'- -------cGGCCCGGCGUgcuuggugGCCGCGGu -3'
miRNA:   3'- agcaaccuCCGGGCUGCAa-------CGGCGCU- -5'
10350 3' -58.4 NC_002687.1 + 304208 0.68 0.900099
Target:  5'- cCGggGGcuAGGCCCGcugcugucauCGgugGCCGCGAu -3'
miRNA:   3'- aGCaaCC--UCCGGGCu---------GCaa-CGGCGCU- -5'
10350 3' -58.4 NC_002687.1 + 110615 0.68 0.881381
Target:  5'- aUGUUGucGGGCuuGAUGUcGCCGUGAa -3'
miRNA:   3'- aGCAACc-UCCGggCUGCAaCGGCGCU- -5'
10350 3' -58.4 NC_002687.1 + 255410 0.69 0.867943
Target:  5'- gUCGUcaauguacUGGAgGGCCuCGGCGUUGCC-Ca- -3'
miRNA:   3'- -AGCA--------ACCU-CCGG-GCUGCAACGGcGcu -5'
10350 3' -58.4 NC_002687.1 + 315870 0.69 0.831238
Target:  5'- aCGggGaGGGGCCCGACGcguCCGCa- -3'
miRNA:   3'- aGCaaC-CUCCGGGCUGCaacGGCGcu -5'
10350 3' -58.4 NC_002687.1 + 85900 0.71 0.737958
Target:  5'- cUCGgcuccUGGAgGGCCaCGugGUccUGCCGCGc -3'
miRNA:   3'- -AGCa----ACCU-CCGG-GCugCA--ACGGCGCu -5'
10350 3' -58.4 NC_002687.1 + 87549 0.8 0.314634
Target:  5'- -aGUUGGuGcGCCCGACGUUGUgGCGGg -3'
miRNA:   3'- agCAACCuC-CGGGCUGCAACGgCGCU- -5'
10350 3' -58.4 NC_002687.1 + 167906 1.09 0.004437
Target:  5'- gUCGUUGGAGGCCCGACGUUGCCGCGAa -3'
miRNA:   3'- -AGCAACCUCCGGGCUGCAACGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.