miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10350 5' -55.4 NC_002687.1 + 296367 0.66 0.989547
Target:  5'- uGCugaaaGGcgUGCACCGCGCCUuGCa- -3'
miRNA:   3'- gCGuug--CCuaGUGUGGCGCGGA-UGcu -5'
10350 5' -55.4 NC_002687.1 + 263498 0.66 0.98942
Target:  5'- -uCGGCGGAUCcuguacugccuggACuCUGCGUCUGCGGa -3'
miRNA:   3'- gcGUUGCCUAG-------------UGuGGCGCGGAUGCU- -5'
10350 5' -55.4 NC_002687.1 + 3416 0.66 0.989164
Target:  5'- aGCGACGGAUCAacggcuauguacauCGCCGCauGCaugggaaaCUugGAg -3'
miRNA:   3'- gCGUUGCCUAGU--------------GUGGCG--CG--------GAugCU- -5'
10350 5' -55.4 NC_002687.1 + 322417 0.66 0.98823
Target:  5'- uGCAucUGGAUCGCAacCCGCuggacaGCCUACuGAu -3'
miRNA:   3'- gCGUu-GCCUAGUGU--GGCG------CGGAUG-CU- -5'
10350 5' -55.4 NC_002687.1 + 102054 0.66 0.986788
Target:  5'- aGCGAUGa---ACAUCGCGCCggACGAc -3'
miRNA:   3'- gCGUUGCcuagUGUGGCGCGGa-UGCU- -5'
10350 5' -55.4 NC_002687.1 + 123399 0.66 0.985214
Target:  5'- gGCcuCGGAUgCGCACC-UGCCgACGAa -3'
miRNA:   3'- gCGuuGCCUA-GUGUGGcGCGGaUGCU- -5'
10350 5' -55.4 NC_002687.1 + 319226 0.66 0.985214
Target:  5'- gGCAAagaaaGGG-CACGCCuccGCGCCU-CGAa -3'
miRNA:   3'- gCGUUg----CCUaGUGUGG---CGCGGAuGCU- -5'
10350 5' -55.4 NC_002687.1 + 246689 0.66 0.985214
Target:  5'- gGCAAagaaaGGG-CACGCCuccGCGCCU-CGAa -3'
miRNA:   3'- gCGUUg----CCUaGUGUGG---CGCGGAuGCU- -5'
10350 5' -55.4 NC_002687.1 + 117651 0.66 0.983501
Target:  5'- uGCAACcGAUgGCGCCuGCcauGCCUAUGGc -3'
miRNA:   3'- gCGUUGcCUAgUGUGG-CG---CGGAUGCU- -5'
10350 5' -55.4 NC_002687.1 + 64245 0.67 0.982404
Target:  5'- uGCAgagaugaaGCGGuguguugccguaguuGUC-CACCGCGUUUACGAa -3'
miRNA:   3'- gCGU--------UGCC---------------UAGuGUGGCGCGGAUGCU- -5'
10350 5' -55.4 NC_002687.1 + 239504 0.67 0.981643
Target:  5'- uGcCAAUGGGUCGCACCaguaCUACGAa -3'
miRNA:   3'- gC-GUUGCCUAGUGUGGcgcgGAUGCU- -5'
10350 5' -55.4 NC_002687.1 + 96167 0.67 0.979631
Target:  5'- aCGCAAUGGAUCGgAugaaccaacguuCCGCgaugGCCUACu- -3'
miRNA:   3'- -GCGUUGCCUAGUgU------------GGCG----CGGAUGcu -5'
10350 5' -55.4 NC_002687.1 + 26037 0.67 0.979631
Target:  5'- aCGCAACGG-UCuAUGCCaGUGCCaaGCGAg -3'
miRNA:   3'- -GCGUUGCCuAG-UGUGG-CGCGGa-UGCU- -5'
10350 5' -55.4 NC_002687.1 + 166447 0.67 0.97746
Target:  5'- gGC-ACGGGcaagUC-CACCGCGgUUGCGAu -3'
miRNA:   3'- gCGuUGCCU----AGuGUGGCGCgGAUGCU- -5'
10350 5' -55.4 NC_002687.1 + 276152 0.67 0.975123
Target:  5'- gGCcGCGG-UCGCGCCGgcgucgaugaGCCUGCGc -3'
miRNA:   3'- gCGuUGCCuAGUGUGGCg---------CGGAUGCu -5'
10350 5' -55.4 NC_002687.1 + 332854 0.67 0.975123
Target:  5'- aGCAugguguCGGAcauaCGCuCUGCGCCUugGAc -3'
miRNA:   3'- gCGUu-----GCCUa---GUGuGGCGCGGAugCU- -5'
10350 5' -55.4 NC_002687.1 + 141236 0.67 0.972614
Target:  5'- uGCcGCGGAgCACgGCCGCGUCgACGu -3'
miRNA:   3'- gCGuUGCCUaGUG-UGGCGCGGaUGCu -5'
10350 5' -55.4 NC_002687.1 + 105315 0.67 0.972614
Target:  5'- gGCAAUGGAcgacgacuggUUGCAgaGaCGCCUGCGAu -3'
miRNA:   3'- gCGUUGCCU----------AGUGUggC-GCGGAUGCU- -5'
10350 5' -55.4 NC_002687.1 + 57228 0.68 0.969927
Target:  5'- gCGCcGCGGG-CAUACaCGCGCagGCGAu -3'
miRNA:   3'- -GCGuUGCCUaGUGUG-GCGCGgaUGCU- -5'
10350 5' -55.4 NC_002687.1 + 109440 0.68 0.969649
Target:  5'- aGguAUGGAaaACACUGCGCCgaacuugUACGAc -3'
miRNA:   3'- gCguUGCCUagUGUGGCGCGG-------AUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.