Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10353 | 3' | -51.7 | NC_002687.1 | + | 239714 | 0.66 | 0.997014 |
Target: 5'- ---cGCCAGaCAAGGUCAG---GGCCGu -3' miRNA: 3'- auuuCGGUC-GUUUCGGUCguuUCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 314673 | 0.66 | 0.997014 |
Target: 5'- -cAGGCUaugaaaaaGGCAGAuGCCAGUGucGCCGc -3' miRNA: 3'- auUUCGG--------UCGUUU-CGGUCGUuuCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 146037 | 0.66 | 0.997014 |
Target: 5'- --cGGCgCAGCAGuccGCCAG--GGGCCGg -3' miRNA: 3'- auuUCG-GUCGUUu--CGGUCguUUCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 3574 | 0.66 | 0.997014 |
Target: 5'- uUAGGGCCGGUgccGAcGUCGGagcaAAGGCCGa -3' miRNA: 3'- -AUUUCGGUCG---UUuCGGUCg---UUUCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 285089 | 0.66 | 0.996965 |
Target: 5'- gAAGGCUGGUgcuuguuGGGGCgGGCGAuuuuGGCCGg -3' miRNA: 3'- aUUUCGGUCG-------UUUCGgUCGUU----UCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 11360 | 0.66 | 0.996493 |
Target: 5'- cGGAGCagCAGCAgcagAAGCCgcgguAGCAGuAGCCGc -3' miRNA: 3'- aUUUCG--GUCGU----UUCGG-----UCGUU-UCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 200298 | 0.66 | 0.996493 |
Target: 5'- -uGAGCCAcuguGCGGAcGCCAGCAAcauauguuuGGCgGa -3' miRNA: 3'- auUUCGGU----CGUUU-CGGUCGUU---------UCGgC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 70353 | 0.66 | 0.996493 |
Target: 5'- ---cGCUAGCAcaAAGaCCGcCAGAGCCGc -3' miRNA: 3'- auuuCGGUCGU--UUC-GGUcGUUUCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 155083 | 0.66 | 0.996493 |
Target: 5'- gAGGGUCAGCGucguGuCCAGCGAucccgcuacGGCCa -3' miRNA: 3'- aUUUCGGUCGUuu--C-GGUCGUU---------UCGGc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 73816 | 0.66 | 0.996493 |
Target: 5'- --cGGCCAGUcc-GCCGGCGAGuuuGCCc -3' miRNA: 3'- auuUCGGUCGuuuCGGUCGUUU---CGGc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 324346 | 0.67 | 0.995899 |
Target: 5'- ---cGCCGGCcacGCCAGCAAAcGCg- -3' miRNA: 3'- auuuCGGUCGuuuCGGUCGUUU-CGgc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 242010 | 0.67 | 0.995899 |
Target: 5'- gUGGAGUgAGCGAGGUgGGgGAgaggaGGCCGg -3' miRNA: 3'- -AUUUCGgUCGUUUCGgUCgUU-----UCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 200592 | 0.67 | 0.995899 |
Target: 5'- aAGAGCC-GCGcGGUCGuCGGGGCCGg -3' miRNA: 3'- aUUUCGGuCGUuUCGGUcGUUUCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 323962 | 0.67 | 0.995899 |
Target: 5'- ---cGCCGGCcacGCCAGCAAAcGCg- -3' miRNA: 3'- auuuCGGUCGuuuCGGUCGUUU-CGgc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 325113 | 0.67 | 0.995899 |
Target: 5'- ---cGCCGGCcacGCCAGCAAAcGCg- -3' miRNA: 3'- auuuCGGUCGuuuCGGUCGUUU-CGgc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 324729 | 0.67 | 0.995899 |
Target: 5'- ---cGCCGGCcacGCCAGCAAAcGCg- -3' miRNA: 3'- auuuCGGUCGuuuCGGUCGUUU-CGgc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 227320 | 0.67 | 0.995836 |
Target: 5'- cGGAGCCAcCGAcaccaccaccggcAGCCGaCGGAGCCGa -3' miRNA: 3'- aUUUCGGUcGUU-------------UCGGUcGUUUCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 24077 | 0.67 | 0.995226 |
Target: 5'- ---cGCCAGCGAuGCCGGaGGGGCg- -3' miRNA: 3'- auuuCGGUCGUUuCGGUCgUUUCGgc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 182073 | 0.67 | 0.995008 |
Target: 5'- gAAGGCCacucAGCucAGaaaauccagaaaauCCAGCAAAGCCa -3' miRNA: 3'- aUUUCGG----UCGuuUC--------------GGUCGUUUCGGc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 9342 | 0.67 | 0.994466 |
Target: 5'- cAGAGUCAaccacGCugauGGGCCGGCAAaacaGGCCa -3' miRNA: 3'- aUUUCGGU-----CGu---UUCGGUCGUU----UCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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