miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10354 5' -53.6 NC_002687.1 + 67745 0.66 0.994636
Target:  5'- cUCCaGAucGAGCAGGCC-CUCCUUUg- -3'
miRNA:   3'- aAGGgCU--CUUGUUCGGaGAGGAAGag -5'
10354 5' -53.6 NC_002687.1 + 164483 0.66 0.992915
Target:  5'- aUCUCGAGAugGucGGCCaCUUCUUCg- -3'
miRNA:   3'- aAGGGCUCUugU--UCGGaGAGGAAGag -5'
10354 5' -53.6 NC_002687.1 + 20704 0.66 0.991903
Target:  5'- cUCCCGuGAACGaguucuGGCgUCUCuCUUCg- -3'
miRNA:   3'- aAGGGCuCUUGU------UCGgAGAG-GAAGag -5'
10354 5' -53.6 NC_002687.1 + 196539 0.66 0.991903
Target:  5'- cUCCCGuGAACGaguucuGGCgUCUCuCUUCg- -3'
miRNA:   3'- aAGGGCuCUUGU------UCGgAGAG-GAAGag -5'
10354 5' -53.6 NC_002687.1 + 222130 0.66 0.991903
Target:  5'- cUCCCGuGAACGaguucuGGCgUCUCuCUUCg- -3'
miRNA:   3'- aAGGGCuCUUGU------UCGgAGAG-GAAGag -5'
10354 5' -53.6 NC_002687.1 + 99097 0.66 0.99078
Target:  5'- -aCCaCGAGAGCAucauccauAGCCUUcaUCUUCUCg -3'
miRNA:   3'- aaGG-GCUCUUGU--------UCGGAGa-GGAAGAG- -5'
10354 5' -53.6 NC_002687.1 + 245931 0.66 0.989538
Target:  5'- -aCCCGGGAuCGAGgucuCCUCUCaucUCUCg -3'
miRNA:   3'- aaGGGCUCUuGUUC----GGAGAGga-AGAG- -5'
10354 5' -53.6 NC_002687.1 + 319984 0.66 0.989538
Target:  5'- -aCCCGGGAuCGAGgucuCCUCUCaucUCUCg -3'
miRNA:   3'- aaGGGCUCUuGUUC----GGAGAGga-AGAG- -5'
10354 5' -53.6 NC_002687.1 + 285053 0.67 0.988169
Target:  5'- -aCCCGGGAGCAAuCCaacaCUCCUUUUa -3'
miRNA:   3'- aaGGGCUCUUGUUcGGa---GAGGAAGAg -5'
10354 5' -53.6 NC_002687.1 + 251223 0.67 0.986665
Target:  5'- cUCCaCGcGGGACGAGCUUCUCaugUCUg -3'
miRNA:   3'- aAGG-GC-UCUUGUUCGGAGAGga-AGAg -5'
10354 5' -53.6 NC_002687.1 + 211424 0.67 0.984845
Target:  5'- cUUCCGuGAACGAaguuuccuucgccGCCUCUCCcgaCUCa -3'
miRNA:   3'- aAGGGCuCUUGUU-------------CGGAGAGGaa-GAG- -5'
10354 5' -53.6 NC_002687.1 + 126442 0.68 0.968857
Target:  5'- uUUCUCGGGAaacaagGCGAGCCUUggugCCgggCUCa -3'
miRNA:   3'- -AAGGGCUCU------UGUUCGGAGa---GGaa-GAG- -5'
10354 5' -53.6 NC_002687.1 + 295745 0.69 0.962543
Target:  5'- -gCUCGAGccgGACcuGCCUCUUUUUCUCa -3'
miRNA:   3'- aaGGGCUC---UUGuuCGGAGAGGAAGAG- -5'
10354 5' -53.6 NC_002687.1 + 183189 1.06 0.013033
Target:  5'- uUUCCCGAGAACAAGCCUCUCCUUCUCc -3'
miRNA:   3'- -AAGGGCUCUUGUUCGGAGAGGAAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.