miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10355 5' -60.4 NC_002687.1 + 261840 0.66 0.900406
Target:  5'- cACGAGCU-GAgGCCGagaGUAGAGuGGa- -3'
miRNA:   3'- -UGCUCGAuCUgCGGCg--CGUCUC-CCcg -5'
10355 5' -60.4 NC_002687.1 + 280280 0.66 0.894399
Target:  5'- -aGAGCga---GCgGUGCGGAuGGGGCu -3'
miRNA:   3'- ugCUCGaucugCGgCGCGUCU-CCCCG- -5'
10355 5' -60.4 NC_002687.1 + 4409 0.66 0.888195
Target:  5'- uCGAGUUGcccucccaucGACGCuccggugcaCGCGCAGuGcGGGCa -3'
miRNA:   3'- uGCUCGAU----------CUGCG---------GCGCGUCuC-CCCG- -5'
10355 5' -60.4 NC_002687.1 + 122493 0.66 0.888195
Target:  5'- uGCGAGCUGGAagaaaUGCUugGCGaggAGAGGaaGGCg -3'
miRNA:   3'- -UGCUCGAUCU-----GCGG--CGCg--UCUCC--CCG- -5'
10355 5' -60.4 NC_002687.1 + 223672 0.66 0.881799
Target:  5'- gAUGcAGUcggGGAUGCCccugaGCGCAGAGGcauGGCa -3'
miRNA:   3'- -UGC-UCGa--UCUGCGG-----CGCGUCUCC---CCG- -5'
10355 5' -60.4 NC_002687.1 + 291662 0.66 0.881799
Target:  5'- cGCGGccGCUGGGCaCCGCGC-GAGGuaaGCg -3'
miRNA:   3'- -UGCU--CGAUCUGcGGCGCGuCUCCc--CG- -5'
10355 5' -60.4 NC_002687.1 + 117852 0.66 0.875213
Target:  5'- -gGGGUU-GAUGCCGaauagaGgAGGGGGGCc -3'
miRNA:   3'- ugCUCGAuCUGCGGCg-----CgUCUCCCCG- -5'
10355 5' -60.4 NC_002687.1 + 146049 0.66 0.868442
Target:  5'- cGCGG--UAGACGaCgGCGCAGcaguccgccAGGGGCc -3'
miRNA:   3'- -UGCUcgAUCUGC-GgCGCGUC---------UCCCCG- -5'
10355 5' -60.4 NC_002687.1 + 268109 0.67 0.854359
Target:  5'- uCGGGC--GGgGCUGCGgGGGGGGGg -3'
miRNA:   3'- uGCUCGauCUgCGGCGCgUCUCCCCg -5'
10355 5' -60.4 NC_002687.1 + 249577 0.67 0.854359
Target:  5'- uCGaAGUc-GGCGCCGUGUAGAucgaugagguccGGGGCg -3'
miRNA:   3'- uGC-UCGauCUGCGGCGCGUCU------------CCCCG- -5'
10355 5' -60.4 NC_002687.1 + 55384 0.67 0.842595
Target:  5'- gACGGGCUugcccgucauaGCCGUGUAGgauAGGGGUg -3'
miRNA:   3'- -UGCUCGAucug-------CGGCGCGUC---UCCCCG- -5'
10355 5' -60.4 NC_002687.1 + 156776 0.67 0.837316
Target:  5'- uGC-AGCUu--CGCCGCGUAGAGuuccagguccgaaaGGGCa -3'
miRNA:   3'- -UGcUCGAucuGCGGCGCGUCUC--------------CCCG- -5'
10355 5' -60.4 NC_002687.1 + 66997 0.67 0.831958
Target:  5'- gAUGAGCgUGGccaaacCGUCGUaCAGGGGGGCc -3'
miRNA:   3'- -UGCUCG-AUCu-----GCGGCGcGUCUCCCCG- -5'
10355 5' -60.4 NC_002687.1 + 311366 0.67 0.824173
Target:  5'- uACGGGCcuaacGugGUaCGCGCGGcAGGGGg -3'
miRNA:   3'- -UGCUCGau---CugCG-GCGCGUC-UCCCCg -5'
10355 5' -60.4 NC_002687.1 + 166309 0.67 0.823386
Target:  5'- -gGAGCUuaucuuGGCcgccgccgcguuuGCCGCGUcgacAGAGGGGUa -3'
miRNA:   3'- ugCUCGAu-----CUG-------------CGGCGCG----UCUCCCCG- -5'
10355 5' -60.4 NC_002687.1 + 149803 0.68 0.805712
Target:  5'- uCGAGCUuGAUGgCGCGauugcagacuaugaCGGAGGGGg -3'
miRNA:   3'- uGCUCGAuCUGCgGCGC--------------GUCUCCCCg -5'
10355 5' -60.4 NC_002687.1 + 145321 0.68 0.783139
Target:  5'- cGCGGGCaccgaGGugGCUGaCGCGGAcaaGGcGGCg -3'
miRNA:   3'- -UGCUCGa----UCugCGGC-GCGUCU---CC-CCG- -5'
10355 5' -60.4 NC_002687.1 + 241963 0.68 0.783139
Target:  5'- -gGGGCaAGAgGgUGCG-AGAGGGGCg -3'
miRNA:   3'- ugCUCGaUCUgCgGCGCgUCUCCCCG- -5'
10355 5' -60.4 NC_002687.1 + 214805 0.68 0.774557
Target:  5'- uCGAGCUGaaucugugcGACGCUuccgGCGCGGAGGacGCg -3'
miRNA:   3'- uGCUCGAU---------CUGCGG----CGCGUCUCCc-CG- -5'
10355 5' -60.4 NC_002687.1 + 307447 0.68 0.774557
Target:  5'- gACGAGCUAGuuGaagaGCGCAGGGauacGGCg -3'
miRNA:   3'- -UGCUCGAUCugCgg--CGCGUCUCc---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.