miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10356 3' -46.1 NC_002687.1 + 309502 0.66 1
Target:  5'- --cAGGGUCGugAGCgUgGUggACGGGGa -3'
miRNA:   3'- guuUCCCAGCugUUGgAgUA--UGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 147632 0.66 1
Target:  5'- -cAGGGGuUCGACAACaagaCAUGCAu-- -3'
miRNA:   3'- guUUCCC-AGCUGUUGga--GUAUGUuuc -5'
10356 3' -46.1 NC_002687.1 + 62949 0.67 1
Target:  5'- ----uGGUCGACAACCUaa-ACGGGGc -3'
miRNA:   3'- guuucCCAGCUGUUGGAguaUGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 83282 0.66 1
Target:  5'- ---cGGGUUGACAgcaGCCUCGcugaccCAGAGc -3'
miRNA:   3'- guuuCCCAGCUGU---UGGAGUau----GUUUC- -5'
10356 3' -46.1 NC_002687.1 + 164914 0.66 1
Target:  5'- cCGucGGaGUCGugAGCCUCGUcCAu-- -3'
miRNA:   3'- -GUuuCC-CAGCugUUGGAGUAuGUuuc -5'
10356 3' -46.1 NC_002687.1 + 91168 0.66 1
Target:  5'- aCAGAGGcGUgGcCAACa-CAUACAAAGa -3'
miRNA:   3'- -GUUUCC-CAgCuGUUGgaGUAUGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 225604 0.66 1
Target:  5'- uCGGGGGGgaaGGCGuguguuCCUCGUACAc-- -3'
miRNA:   3'- -GUUUCCCag-CUGUu-----GGAGUAUGUuuc -5'
10356 3' -46.1 NC_002687.1 + 33325 0.67 1
Target:  5'- uCGAGGGGUUGAacaGGCCguuugacUCcgGCGAGGu -3'
miRNA:   3'- -GUUUCCCAGCUg--UUGG-------AGuaUGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 234664 0.66 1
Target:  5'- -cAAGGGcggCGGCAGCCUCGa------ -3'
miRNA:   3'- guUUCCCa--GCUGUUGGAGUauguuuc -5'
10356 3' -46.1 NC_002687.1 + 168844 0.67 0.999999
Target:  5'- -cAAGGGUC-AUGGCCUUGUagGCGGAGg -3'
miRNA:   3'- guUUCCCAGcUGUUGGAGUA--UGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 215216 0.67 0.999999
Target:  5'- aAGAGGGuauuUCGACAgGCaCUCGUGCGu-- -3'
miRNA:   3'- gUUUCCC----AGCUGU-UG-GAGUAUGUuuc -5'
10356 3' -46.1 NC_002687.1 + 41172 0.67 0.999999
Target:  5'- aCAGAGGGUgGcACAACCgagaCAcGCGAAc -3'
miRNA:   3'- -GUUUCCCAgC-UGUUGGa---GUaUGUUUc -5'
10356 3' -46.1 NC_002687.1 + 252997 0.68 0.999997
Target:  5'- gCGAAGGuUUGAUGGCUUCGUACAc-- -3'
miRNA:   3'- -GUUUCCcAGCUGUUGGAGUAUGUuuc -5'
10356 3' -46.1 NC_002687.1 + 242455 0.68 0.999997
Target:  5'- ---cGGGcgaugaaaagcUCGACGACCUUGUuuGCAAAGu -3'
miRNA:   3'- guuuCCC-----------AGCUGUUGGAGUA--UGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 88591 0.68 0.999997
Target:  5'- ---cGGuGUCGACGGCCgag-GCGGAGa -3'
miRNA:   3'- guuuCC-CAGCUGUUGGaguaUGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 200518 0.68 0.999991
Target:  5'- gGAAGuGGUCGACAugCUCc--UGAAGg -3'
miRNA:   3'- gUUUC-CCAGCUGUugGAGuauGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 60652 0.69 0.999988
Target:  5'- --uGGGGUCGACGAUaaaGUACGAu- -3'
miRNA:   3'- guuUCCCAGCUGUUGgagUAUGUUuc -5'
10356 3' -46.1 NC_002687.1 + 138765 0.69 0.999977
Target:  5'- gCGucGGGUCGACAGgCUUggGCAuGGa -3'
miRNA:   3'- -GUuuCCCAGCUGUUgGAGuaUGUuUC- -5'
10356 3' -46.1 NC_002687.1 + 47541 0.69 0.999977
Target:  5'- aCAGGGGG--GACAGCCUCGggcgGCGcAGa -3'
miRNA:   3'- -GUUUCCCagCUGUUGGAGUa---UGUuUC- -5'
10356 3' -46.1 NC_002687.1 + 319244 0.69 0.999977
Target:  5'- ---cGGGaaCGGCAGCUUCAggGCAAAGa -3'
miRNA:   3'- guuuCCCa-GCUGUUGGAGUa-UGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.