miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10356 3' -46.1 NC_002687.1 + 208460 0.69 0.999969
Target:  5'- uCAGGGGGUCGACGugguGCCUUc-GCGGGu -3'
miRNA:   3'- -GUUUCCCAGCUGU----UGGAGuaUGUUUc -5'
10356 3' -46.1 NC_002687.1 + 77144 0.69 0.999969
Target:  5'- gCGucGGGUCGACAuUCUgCAUgaACAAGGg -3'
miRNA:   3'- -GUuuCCCAGCUGUuGGA-GUA--UGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 135348 0.7 0.999945
Target:  5'- --cGGGGUUGACuuuguccucgggAACCUUGUGCGAAa -3'
miRNA:   3'- guuUCCCAGCUG------------UUGGAGUAUGUUUc -5'
10356 3' -46.1 NC_002687.1 + 143345 0.7 0.999928
Target:  5'- gGAGGGGUgCGACucUCUCGU-CAAGGa -3'
miRNA:   3'- gUUUCCCA-GCUGuuGGAGUAuGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 11179 0.7 0.999906
Target:  5'- gGAAGGuUUGACAcgcaACCUCAgugGCGAAGc -3'
miRNA:   3'- gUUUCCcAGCUGU----UGGAGUa--UGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 144504 0.71 0.999839
Target:  5'- -cGGGGGUCGGugucaauacacacCGACCUUAUAuCGAGGa -3'
miRNA:   3'- guUUCCCAGCU-------------GUUGGAGUAU-GUUUC- -5'
10356 3' -46.1 NC_002687.1 + 218328 0.71 0.9998
Target:  5'- aCAGAGGGUUGGCG--UUgAUACAGGGg -3'
miRNA:   3'- -GUUUCCCAGCUGUugGAgUAUGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 115812 0.71 0.9998
Target:  5'- gGGAGGGUCGGCAcggaaccaACCccCAcaauUGCAAAGa -3'
miRNA:   3'- gUUUCCCAGCUGU--------UGGa-GU----AUGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 260010 0.71 0.999746
Target:  5'- gCAGAGGcUCGAUGACuCUCGagGCAAAGg -3'
miRNA:   3'- -GUUUCCcAGCUGUUG-GAGUa-UGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 208009 0.71 0.999746
Target:  5'- gCGucGGGUCGGaguACCUCuggACGGAGg -3'
miRNA:   3'- -GUuuCCCAGCUgu-UGGAGua-UGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 200093 0.71 0.99968
Target:  5'- gCAAA-GGUCGACAugCUCGUugGu-- -3'
miRNA:   3'- -GUUUcCCAGCUGUugGAGUAugUuuc -5'
10356 3' -46.1 NC_002687.1 + 243436 0.78 0.967674
Target:  5'- uCGAAGuGUCGAgGGCCUCGUGCAAu- -3'
miRNA:   3'- -GUUUCcCAGCUgUUGGAGUAUGUUuc -5'
10356 3' -46.1 NC_002687.1 + 275483 0.79 0.953267
Target:  5'- uCGAGGGGUgCGGCGGCUUCG-ACGGAGg -3'
miRNA:   3'- -GUUUCCCA-GCUGUUGGAGUaUGUUUC- -5'
10356 3' -46.1 NC_002687.1 + 199666 1.09 0.057385
Target:  5'- uCAAAGGGUCGACAACCUCAUACAAAGc -3'
miRNA:   3'- -GUUUCCCAGCUGUUGGAGUAUGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.