miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10356 5' -54.2 NC_002687.1 + 83696 0.66 0.995582
Target:  5'- cCGUUgCGAGAgAggauUCGGUGUCGcuaGCCg- -3'
miRNA:   3'- -GCGAgGCUCUgU----AGCCACAGU---UGGag -5'
10356 5' -54.2 NC_002687.1 + 106831 0.66 0.995582
Target:  5'- uCGCUggGAGACugGUUGGUGUCuuugaGACCUUc -3'
miRNA:   3'- -GCGAggCUCUG--UAGCCACAG-----UUGGAG- -5'
10356 5' -54.2 NC_002687.1 + 219130 0.66 0.994145
Target:  5'- aGUcugUCagaGAGACGauUCGGcugugGUCAACCUCu -3'
miRNA:   3'- gCG---AGg--CUCUGU--AGCCa----CAGUUGGAG- -5'
10356 5' -54.2 NC_002687.1 + 164933 0.66 0.993297
Target:  5'- gGUgCCGAGc---CGGUGUCuGCCUCg -3'
miRNA:   3'- gCGaGGCUCuguaGCCACAGuUGGAG- -5'
10356 5' -54.2 NC_002687.1 + 165937 0.66 0.993297
Target:  5'- uGgUCC-AGACcUCGGUGUCGacacGCCUa -3'
miRNA:   3'- gCgAGGcUCUGuAGCCACAGU----UGGAg -5'
10356 5' -54.2 NC_002687.1 + 101030 0.66 0.992354
Target:  5'- gCGCgucgCCGAcggugaaggcGGCAcCGGUGUCGACgUUg -3'
miRNA:   3'- -GCGa---GGCU----------CUGUaGCCACAGUUGgAG- -5'
10356 5' -54.2 NC_002687.1 + 145824 0.66 0.992354
Target:  5'- gCGCgcgCCGGGGCGcUGG-GUCAGcuCCUCc -3'
miRNA:   3'- -GCGa--GGCUCUGUaGCCaCAGUU--GGAG- -5'
10356 5' -54.2 NC_002687.1 + 22630 0.66 0.991308
Target:  5'- gCGCUCaCGGGACG-CGGUugaagCAACCg- -3'
miRNA:   3'- -GCGAG-GCUCUGUaGCCAca---GUUGGag -5'
10356 5' -54.2 NC_002687.1 + 135300 0.66 0.991308
Target:  5'- uGCgaauaauugCCGGGAgcUCGGUGUCcugGAUCUCg -3'
miRNA:   3'- gCGa--------GGCUCUguAGCCACAG---UUGGAG- -5'
10356 5' -54.2 NC_002687.1 + 297350 0.66 0.990973
Target:  5'- gCGCUCCGgccccauccccggcGGuuGUCGGUGauUCGGCCa- -3'
miRNA:   3'- -GCGAGGC--------------UCugUAGCCAC--AGUUGGag -5'
10356 5' -54.2 NC_002687.1 + 95545 0.68 0.982472
Target:  5'- uCGCUUCGAGGCGUCGcgagcacacacGUGUCGAg--- -3'
miRNA:   3'- -GCGAGGCUCUGUAGC-----------CACAGUUggag -5'
10356 5' -54.2 NC_002687.1 + 168775 0.68 0.982472
Target:  5'- aCGaucCCGGGACggugcccccgGUCGGcuccugUGUCAGCCUCu -3'
miRNA:   3'- -GCga-GGCUCUG----------UAGCC------ACAGUUGGAG- -5'
10356 5' -54.2 NC_002687.1 + 320615 0.68 0.982472
Target:  5'- gGgUCUG-GAUucUCGGUGUCGACUUCc -3'
miRNA:   3'- gCgAGGCuCUGu-AGCCACAGUUGGAG- -5'
10356 5' -54.2 NC_002687.1 + 207990 0.68 0.980505
Target:  5'- aGCUCgGAcuuccgggauGGCGUCGG-GUCGgaguACCUCu -3'
miRNA:   3'- gCGAGgCU----------CUGUAGCCaCAGU----UGGAG- -5'
10356 5' -54.2 NC_002687.1 + 259621 0.68 0.978378
Target:  5'- uCGUgCCGAuuGGUGUUGGUGUCGACCUUu -3'
miRNA:   3'- -GCGaGGCU--CUGUAGCCACAGUUGGAG- -5'
10356 5' -54.2 NC_002687.1 + 76815 0.69 0.961892
Target:  5'- --aUCCGAGAgGUCGGUGUagucaAACC-Cg -3'
miRNA:   3'- gcgAGGCUCUgUAGCCACAg----UUGGaG- -5'
10356 5' -54.2 NC_002687.1 + 89712 0.7 0.951013
Target:  5'- uGuCUCCGccGAgGUCGGUGUCGucguagaaACCUCc -3'
miRNA:   3'- gC-GAGGCu-CUgUAGCCACAGU--------UGGAG- -5'
10356 5' -54.2 NC_002687.1 + 131564 0.71 0.918143
Target:  5'- uGCUCauaacaGAcGACAUCGGauuagcUGUCGACCUUu -3'
miRNA:   3'- gCGAGg-----CU-CUGUAGCC------ACAGUUGGAG- -5'
10356 5' -54.2 NC_002687.1 + 254233 0.71 0.906784
Target:  5'- aGCUCCaGAGGCGacaugCGGagcgcUGUCAACCUg -3'
miRNA:   3'- gCGAGG-CUCUGUa----GCC-----ACAGUUGGAg -5'
10356 5' -54.2 NC_002687.1 + 77173 0.71 0.90078
Target:  5'- gGUUCCGAGcACAcuucgaauUCGGUGUacuucaucaucaCGGCCUCg -3'
miRNA:   3'- gCGAGGCUC-UGU--------AGCCACA------------GUUGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.