miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10357 3' -60.6 NC_002687.1 + 212411 0.66 0.89332
Target:  5'- aGCGGACGC-AGGAcuuugaGGUGGccGCGGa -3'
miRNA:   3'- cUGCCUGCGcUCCU------CCACCucCGCUa -5'
10357 3' -60.6 NC_002687.1 + 60189 0.66 0.89332
Target:  5'- cGGCGGACuGCcaAGGGuuugucGGUGGAuGGCGAc -3'
miRNA:   3'- -CUGCCUG-CGc-UCCU------CCACCU-CCGCUa -5'
10357 3' -60.6 NC_002687.1 + 224098 0.66 0.887078
Target:  5'- uGGCGGACGUucGGGAcgcGGUGGcGGUGGc -3'
miRNA:   3'- -CUGCCUGCGc-UCCU---CCACCuCCGCUa -5'
10357 3' -60.6 NC_002687.1 + 2818 0.66 0.880644
Target:  5'- aGACGcaGAUGCgGAGGGGGUGGAcGGauuGAa -3'
miRNA:   3'- -CUGC--CUGCG-CUCCUCCACCU-CCg--CUa -5'
10357 3' -60.6 NC_002687.1 + 226762 0.66 0.87402
Target:  5'- cGGCGGugGUGGuagcGGuGaUGGAGGUGGUg -3'
miRNA:   3'- -CUGCCugCGCU----CCuCcACCUCCGCUA- -5'
10357 3' -60.6 NC_002687.1 + 231603 0.66 0.87402
Target:  5'- gGugGGA-GUGGGGGGaGUGGGGG-GAg -3'
miRNA:   3'- -CugCCUgCGCUCCUC-CACCUCCgCUa -5'
10357 3' -60.6 NC_002687.1 + 328275 0.66 0.873347
Target:  5'- uGACGGugGC-AGGcagcguuGGUGGAcaacgucGGCGAUc -3'
miRNA:   3'- -CUGCCugCGcUCCu------CCACCU-------CCGCUA- -5'
10357 3' -60.6 NC_002687.1 + 89078 0.66 0.860221
Target:  5'- -gUGGugGUGGuGGuGGUGGuGGUGGUg -3'
miRNA:   3'- cuGCCugCGCU-CCuCCACCuCCGCUA- -5'
10357 3' -60.6 NC_002687.1 + 158753 0.66 0.860221
Target:  5'- uGCGGACGCG-GGAGcugaugaauguuGUGuGGGCGGg -3'
miRNA:   3'- cUGCCUGCGCuCCUC------------CACcUCCGCUa -5'
10357 3' -60.6 NC_002687.1 + 309795 0.67 0.830551
Target:  5'- uGGCGGugGUGAagcaucagcucgGGAGGaGGGGGUGu- -3'
miRNA:   3'- -CUGCCugCGCU------------CCUCCaCCUCCGCua -5'
10357 3' -60.6 NC_002687.1 + 307619 0.67 0.829775
Target:  5'- cACGGGCgGCGGcggugcuGGuGGUGGAGGcCGGa -3'
miRNA:   3'- cUGCCUG-CGCU-------CCuCCACCUCC-GCUa -5'
10357 3' -60.6 NC_002687.1 + 224436 0.67 0.814766
Target:  5'- -gUGGugGUGGuGGuGGUGGuGGCGGc -3'
miRNA:   3'- cuGCCugCGCU-CCuCCACCuCCGCUa -5'
10357 3' -60.6 NC_002687.1 + 172285 0.68 0.798414
Target:  5'- uGCGGugGgGAac-GGUGGGGGCGGg -3'
miRNA:   3'- cUGCCugCgCUccuCCACCUCCGCUa -5'
10357 3' -60.6 NC_002687.1 + 48986 0.68 0.781547
Target:  5'- cGCGGGCGUGAGaGGGUGuGGGGaGAa -3'
miRNA:   3'- cUGCCUGCGCUCcUCCAC-CUCCgCUa -5'
10357 3' -60.6 NC_002687.1 + 303912 0.68 0.764222
Target:  5'- cGAUGGA-GUGAGaGAGGUGGuGGCu-- -3'
miRNA:   3'- -CUGCCUgCGCUC-CUCCACCuCCGcua -5'
10357 3' -60.6 NC_002687.1 + 120962 0.68 0.755405
Target:  5'- uGugGGugGCagaaGAGGGGGUGGuugcugGGGCuGGUa -3'
miRNA:   3'- -CugCCugCG----CUCCUCCACC------UCCG-CUA- -5'
10357 3' -60.6 NC_002687.1 + 211920 0.69 0.746495
Target:  5'- cACGGAUGgGAGGAGGUuauuauuGAcGGCGAg -3'
miRNA:   3'- cUGCCUGCgCUCCUCCAc------CU-CCGCUa -5'
10357 3' -60.6 NC_002687.1 + 10450 0.69 0.746495
Target:  5'- -uCGGAUGCGGGGAcGGagGGGGGUGc- -3'
miRNA:   3'- cuGCCUGCGCUCCU-CCa-CCUCCGCua -5'
10357 3' -60.6 NC_002687.1 + 130724 0.69 0.746495
Target:  5'- uGGCGGugGUGGuGGuGGcGGuGGCGGUg -3'
miRNA:   3'- -CUGCCugCGCU-CCuCCaCCuCCGCUA- -5'
10357 3' -60.6 NC_002687.1 + 69042 0.69 0.71928
Target:  5'- cGAUGGugGCGGcGGuggcGGUGGugucGGCGGUg -3'
miRNA:   3'- -CUGCCugCGCU-CCu---CCACCu---CCGCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.