miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10357 3' -60.6 NC_002687.1 + 199810 1.05 0.004881
Target:  5'- cGACGGACGCGAGGAGGUGGAGGCGAUc -3'
miRNA:   3'- -CUGCCUGCGCUCCUCCACCUCCGCUA- -5'
10357 3' -60.6 NC_002687.1 + 173595 0.77 0.295876
Target:  5'- aGGCGGAgGCGGgggcGGAGGcGGAGGCGGa -3'
miRNA:   3'- -CUGCCUgCGCU----CCUCCaCCUCCGCUa -5'
10357 3' -60.6 NC_002687.1 + 173547 0.77 0.311441
Target:  5'- aGGCGGAgGCgGAGGugggacuggaggcgcAGGUGGAGGCGGa -3'
miRNA:   3'- -CUGCCUgCG-CUCC---------------UCCACCUCCGCUa -5'
10357 3' -60.6 NC_002687.1 + 224173 0.75 0.394489
Target:  5'- uGGCGGugGCGGGGGcagugcuGGUGGcgguGGCGGUg -3'
miRNA:   3'- -CUGCCugCGCUCCU-------CCACCu---CCGCUA- -5'
10357 3' -60.6 NC_002687.1 + 226822 0.75 0.398411
Target:  5'- uGGCGGugGCGGuggcGGAgcggugaacgaugauGGUGGAGGCGGg -3'
miRNA:   3'- -CUGCCugCGCU----CCU---------------CCACCUCCGCUa -5'
10357 3' -60.6 NC_002687.1 + 224209 0.74 0.435633
Target:  5'- uGGCGGugGCGGuGGcGGUGGcgauGGCGAUg -3'
miRNA:   3'- -CUGCCugCGCU-CCuCCACCu---CCGCUA- -5'
10357 3' -60.6 NC_002687.1 + 268107 0.73 0.487049
Target:  5'- gGGCGGGgcUGCGGGGGGGggggGGAGGgGGg -3'
miRNA:   3'- -CUGCCU--GCGCUCCUCCa---CCUCCgCUa -5'
10357 3' -60.6 NC_002687.1 + 224323 0.72 0.531986
Target:  5'- uGGCGGugGCaGugcuGGuGGUGGuGGCGAUg -3'
miRNA:   3'- -CUGCCugCG-Cu---CCuCCACCuCCGCUA- -5'
10357 3' -60.6 NC_002687.1 + 20835 0.72 0.559657
Target:  5'- cACGGugGUGAacauccuguuGGAGGcGGGGGCGGa -3'
miRNA:   3'- cUGCCugCGCU----------CCUCCaCCUCCGCUa -5'
10357 3' -60.6 NC_002687.1 + 332258 0.72 0.578328
Target:  5'- cGGCGGcgGCGCuuGGGcGUGGAGGCGAUu -3'
miRNA:   3'- -CUGCC--UGCGcuCCUcCACCUCCGCUA- -5'
10357 3' -60.6 NC_002687.1 + 146268 0.71 0.600902
Target:  5'- uGGCGGACGUGAuGGAGugcaucuggcgcuguGUGGuGGUGAUg -3'
miRNA:   3'- -CUGCCUGCGCU-CCUC---------------CACCuCCGCUA- -5'
10357 3' -60.6 NC_002687.1 + 173499 0.71 0.606566
Target:  5'- aGGCGGAgGCgGAGGuGGgacUGGAGGCGc- -3'
miRNA:   3'- -CUGCCUgCG-CUCCuCC---ACCUCCGCua -5'
10357 3' -60.6 NC_002687.1 + 223496 0.71 0.634951
Target:  5'- uGGCGGGgGCGGGGGaagccGUGGuGGCGAc -3'
miRNA:   3'- -CUGCCUgCGCUCCUc----CACCuCCGCUa -5'
10357 3' -60.6 NC_002687.1 + 179425 0.7 0.682131
Target:  5'- -gUGGGCGgGAGGAGGaGGAGGagGAg -3'
miRNA:   3'- cuGCCUGCgCUCCUCCaCCUCCg-CUa -5'
10357 3' -60.6 NC_002687.1 + 69042 0.69 0.71928
Target:  5'- cGAUGGugGCGGcGGuggcGGUGGugucGGCGGUg -3'
miRNA:   3'- -CUGCCugCGCU-CCu---CCACCu---CCGCUA- -5'
10357 3' -60.6 NC_002687.1 + 130724 0.69 0.746495
Target:  5'- uGGCGGugGUGGuGGuGGcGGuGGCGGUg -3'
miRNA:   3'- -CUGCCugCGCU-CCuCCaCCuCCGCUA- -5'
10357 3' -60.6 NC_002687.1 + 211920 0.69 0.746495
Target:  5'- cACGGAUGgGAGGAGGUuauuauuGAcGGCGAg -3'
miRNA:   3'- cUGCCUGCgCUCCUCCAc------CU-CCGCUa -5'
10357 3' -60.6 NC_002687.1 + 10450 0.69 0.746495
Target:  5'- -uCGGAUGCGGGGAcGGagGGGGGUGc- -3'
miRNA:   3'- cuGCCUGCGCUCCU-CCa-CCUCCGCua -5'
10357 3' -60.6 NC_002687.1 + 120962 0.68 0.755405
Target:  5'- uGugGGugGCagaaGAGGGGGUGGuugcugGGGCuGGUa -3'
miRNA:   3'- -CugCCugCG----CUCCUCCACC------UCCG-CUA- -5'
10357 3' -60.6 NC_002687.1 + 303912 0.68 0.764222
Target:  5'- cGAUGGA-GUGAGaGAGGUGGuGGCu-- -3'
miRNA:   3'- -CUGCCUgCGCUC-CUCCACCuCCGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.