miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10357 5' -52.8 NC_002687.1 + 271779 0.66 0.997547
Target:  5'- uGCAUcGUCCaguguuauagugGCCgagUCAGGUGCAUCg -3'
miRNA:   3'- -CGUA-CGGGgga---------CGGa--AGUUCAUGUAG- -5'
10357 5' -52.8 NC_002687.1 + 177806 0.66 0.997381
Target:  5'- cCAUGCCUCaaccgUGuUCUUCAGGUACAg- -3'
miRNA:   3'- cGUACGGGGg----AC-GGAAGUUCAUGUag -5'
10357 5' -52.8 NC_002687.1 + 282202 0.66 0.997381
Target:  5'- ---cGCCcgCCCUGCCUgcUCAGGUucuccugcCAUCg -3'
miRNA:   3'- cguaCGG--GGGACGGA--AGUUCAu-------GUAG- -5'
10357 5' -52.8 NC_002687.1 + 40050 0.66 0.996925
Target:  5'- ---cGCCCCC-GCCgaCAGGacaugGCGUCg -3'
miRNA:   3'- cguaCGGGGGaCGGaaGUUCa----UGUAG- -5'
10357 5' -52.8 NC_002687.1 + 291189 0.66 0.996405
Target:  5'- cGgGUGCUCUUgGCCUUCAG--GCAUCg -3'
miRNA:   3'- -CgUACGGGGGaCGGAAGUUcaUGUAG- -5'
10357 5' -52.8 NC_002687.1 + 86644 0.67 0.994396
Target:  5'- uCAUGCCCa-UGCCagUCGGGaGCGUCc -3'
miRNA:   3'- cGUACGGGggACGGa-AGUUCaUGUAG- -5'
10357 5' -52.8 NC_002687.1 + 205549 0.67 0.993464
Target:  5'- -aGUGCCacacacaccggaaCCCUGU--UCGGGUACGUCa -3'
miRNA:   3'- cgUACGG-------------GGGACGgaAGUUCAUGUAG- -5'
10357 5' -52.8 NC_002687.1 + 269767 0.67 0.991566
Target:  5'- cGgAUGCCaCCCgaaauauacgaUGCCUUCAaaaAGUGCGa- -3'
miRNA:   3'- -CgUACGG-GGG-----------ACGGAAGU---UCAUGUag -5'
10357 5' -52.8 NC_002687.1 + 44991 0.67 0.989122
Target:  5'- cGC-UGCCUgCCUcacGCCUUCGgAGUGCAUg -3'
miRNA:   3'- -CGuACGGG-GGA---CGGAAGU-UCAUGUAg -5'
10357 5' -52.8 NC_002687.1 + 320784 0.67 0.988986
Target:  5'- -aAUGUCCagguacaCCggGuCCUUCAGGUACAUCg -3'
miRNA:   3'- cgUACGGG-------GGa-C-GGAAGUUCAUGUAG- -5'
10357 5' -52.8 NC_002687.1 + 245131 0.67 0.988986
Target:  5'- -aAUGUCCagguacaCCggGuCCUUCAGGUACAUCg -3'
miRNA:   3'- cgUACGGG-------GGa-C-GGAAGUUCAUGUAG- -5'
10357 5' -52.8 NC_002687.1 + 200889 0.68 0.980601
Target:  5'- cGUcgGCUCCa-GCCUUCAGGaGCAUg -3'
miRNA:   3'- -CGuaCGGGGgaCGGAAGUUCaUGUAg -5'
10357 5' -52.8 NC_002687.1 + 330870 0.74 0.814941
Target:  5'- aGCAgGCCCgCUcgcuggccagcaGCCUUCAGGUGCGUa -3'
miRNA:   3'- -CGUaCGGGgGA------------CGGAAGUUCAUGUAg -5'
10357 5' -52.8 NC_002687.1 + 143394 0.75 0.797533
Target:  5'- cGCAUGCCCCCgaggGCUUcaUCGAcGUGCGc- -3'
miRNA:   3'- -CGUACGGGGGa---CGGA--AGUU-CAUGUag -5'
10357 5' -52.8 NC_002687.1 + 199770 1.13 0.006662
Target:  5'- gGCAUGCCCCCUGCCUUCAAGUACAUCg -3'
miRNA:   3'- -CGUACGGGGGACGGAAGUUCAUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.