miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10358 3' -56.1 NC_002687.1 + 240540 0.66 0.976488
Target:  5'- gGCCGAUCGCCgggguuuACCACaGgcUCCagcaccagCCUCu -3'
miRNA:   3'- -CGGUUAGCGG-------UGGUGgCauAGG--------GGAG- -5'
10358 3' -56.1 NC_002687.1 + 226808 0.66 0.976488
Target:  5'- uCCGGUCcacgggagcuccaGCUGCCugCGUagccGUCUCCUCg -3'
miRNA:   3'- cGGUUAG-------------CGGUGGugGCA----UAGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 202845 0.66 0.974325
Target:  5'- uGCCGugcagacguUCGUCAUCACCGccaaacagguUUCCCUCg -3'
miRNA:   3'- -CGGUu--------AGCGGUGGUGGCau--------AGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 247879 0.67 0.971755
Target:  5'- aGCCAcuuUCGCCACCAauCCuUGUCCa-UCg -3'
miRNA:   3'- -CGGUu--AGCGGUGGU--GGcAUAGGggAG- -5'
10358 3' -56.1 NC_002687.1 + 205013 0.67 0.971755
Target:  5'- cGCCcg-CGCUGUCACCGgugauUCCCUUCg -3'
miRNA:   3'- -CGGuuaGCGGUGGUGGCau---AGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 308488 0.67 0.971755
Target:  5'- aGCUAcgCGgcuuccaCACUACCGUgaacAUUCCCUCg -3'
miRNA:   3'- -CGGUuaGCg------GUGGUGGCA----UAGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 72920 0.67 0.971755
Target:  5'- uGCCGA-CGCCGCCGCCGccgacacaCCgCCg- -3'
miRNA:   3'- -CGGUUaGCGGUGGUGGCaua-----GG-GGag -5'
10358 3' -56.1 NC_002687.1 + 224494 0.67 0.971755
Target:  5'- cGCCAG-CGCCACCGCCa---CCgCCa- -3'
miRNA:   3'- -CGGUUaGCGGUGGUGGcauaGG-GGag -5'
10358 3' -56.1 NC_002687.1 + 248714 0.67 0.971755
Target:  5'- -gCAAUCGCCauguacGCCGCCGUcUCCgCa- -3'
miRNA:   3'- cgGUUAGCGG------UGGUGGCAuAGGgGag -5'
10358 3' -56.1 NC_002687.1 + 292806 0.67 0.971755
Target:  5'- aCCAAUCGCUGCCGaaaGUGUCagCCCg- -3'
miRNA:   3'- cGGUUAGCGGUGGUgg-CAUAG--GGGag -5'
10358 3' -56.1 NC_002687.1 + 101140 0.67 0.969005
Target:  5'- cGCCGAUUGCCAggcCCuCCGU-UCCCa-- -3'
miRNA:   3'- -CGGUUAGCGGU---GGuGGCAuAGGGgag -5'
10358 3' -56.1 NC_002687.1 + 225212 0.67 0.969005
Target:  5'- uGCCGG-CGCCGCCGCgucggCGgcUCUCCg- -3'
miRNA:   3'- -CGGUUaGCGGUGGUG-----GCauAGGGGag -5'
10358 3' -56.1 NC_002687.1 + 300508 0.67 0.969005
Target:  5'- uGCCgGGUCaCCGCUACUccAUCCCUUCg -3'
miRNA:   3'- -CGG-UUAGcGGUGGUGGcaUAGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 97976 0.67 0.96607
Target:  5'- uGCCGGcaCGUCAUCACUGUAcggcgucaUCCCCa- -3'
miRNA:   3'- -CGGUUa-GCGGUGGUGGCAU--------AGGGGag -5'
10358 3' -56.1 NC_002687.1 + 10673 0.67 0.96607
Target:  5'- cGCCAcugcCGCCGCCACUGcugCUaCCUCu -3'
miRNA:   3'- -CGGUua--GCGGUGGUGGCauaGG-GGAG- -5'
10358 3' -56.1 NC_002687.1 + 180359 0.67 0.96607
Target:  5'- cGCCGcgCGCUGCaCGCagaaGUgGUCCCaCUCg -3'
miRNA:   3'- -CGGUuaGCGGUG-GUGg---CA-UAGGG-GAG- -5'
10358 3' -56.1 NC_002687.1 + 69408 0.67 0.96607
Target:  5'- cGCCGAcaccacCGCCACCGCCGccaccAUCgCCa- -3'
miRNA:   3'- -CGGUUa-----GCGGUGGUGGCa----UAGgGGag -5'
10358 3' -56.1 NC_002687.1 + 108765 0.67 0.96607
Target:  5'- cCCGAU-GCCACCucguCCGg--CCCCUg -3'
miRNA:   3'- cGGUUAgCGGUGGu---GGCauaGGGGAg -5'
10358 3' -56.1 NC_002687.1 + 173858 0.67 0.962943
Target:  5'- uCCAGUC-CCACCuCCGccUCCgCCUCc -3'
miRNA:   3'- cGGUUAGcGGUGGuGGCauAGG-GGAG- -5'
10358 3' -56.1 NC_002687.1 + 199750 0.67 0.962943
Target:  5'- uGUCAA-CGCCGuCCGCCuGUG-CCCgCUCg -3'
miRNA:   3'- -CGGUUaGCGGU-GGUGG-CAUaGGG-GAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.