miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10358 5' -62.7 NC_002687.1 + 280950 0.68 0.68698
Target:  5'- aGCGucGGCGGGgGCcuggguGGCGGcaGCGGCGg- -3'
miRNA:   3'- -UGC--UCGCCCgUGu-----CCGCC--UGCCGCaa -5'
10358 5' -62.7 NC_002687.1 + 133983 0.68 0.649651
Target:  5'- cACGAcaucuaccacGCGGGCAaagacaAGGCGGgcaacGCGGUGUa -3'
miRNA:   3'- -UGCU----------CGCCCGUg-----UCCGCC-----UGCCGCAa -5'
10358 5' -62.7 NC_002687.1 + 316196 0.68 0.649651
Target:  5'- uGCG-GCGGGaucuuCGGGUGcGGCGGCGg- -3'
miRNA:   3'- -UGCuCGCCCgu---GUCCGC-CUGCCGCaa -5'
10358 5' -62.7 NC_002687.1 + 201884 0.69 0.640273
Target:  5'- uCGGGCGGG-GCAGGCGGGuguguuuauguCGGuCGUg -3'
miRNA:   3'- uGCUCGCCCgUGUCCGCCU-----------GCC-GCAa -5'
10358 5' -62.7 NC_002687.1 + 173620 0.7 0.556334
Target:  5'- gGCGgaGGCGGGgGCggAGGCGGACGcggaaGCGUa -3'
miRNA:   3'- -UGC--UCGCCCgUG--UCCGCCUGC-----CGCAa -5'
10358 5' -62.7 NC_002687.1 + 18640 0.7 0.547159
Target:  5'- -gGAG-GGGCAagAGGCGG-CGGCGUg -3'
miRNA:   3'- ugCUCgCCCGUg-UCCGCCuGCCGCAa -5'
10358 5' -62.7 NC_002687.1 + 225016 0.71 0.502098
Target:  5'- -gGAGCGGGUGguGGC-GugGGCGUc -3'
miRNA:   3'- ugCUCGCCCGUguCCGcCugCCGCAa -5'
10358 5' -62.7 NC_002687.1 + 200970 0.72 0.433697
Target:  5'- uCGGGCGGG-GCAGGCGGGC-GUGUUu -3'
miRNA:   3'- uGCUCGCCCgUGUCCGCCUGcCGCAA- -5'
10358 5' -62.7 NC_002687.1 + 307627 0.72 0.433697
Target:  5'- -gGuGCuGGCACGGGCGG-CGGCGg- -3'
miRNA:   3'- ugCuCGcCCGUGUCCGCCuGCCGCaa -5'
10358 5' -62.7 NC_002687.1 + 145316 0.74 0.361439
Target:  5'- aACGGcGCGGGCACcgAGGUGGcugacgcggacaagGCGGCGUa -3'
miRNA:   3'- -UGCU-CGCCCGUG--UCCGCC--------------UGCCGCAa -5'
10358 5' -62.7 NC_002687.1 + 194492 1.04 0.003455
Target:  5'- aACGAGCGGGCGCAGGCGGACGGCGUUg -3'
miRNA:   3'- -UGCUCGCCCGUGUCCGCCUGCCGCAA- -5'
10358 5' -62.7 NC_002687.1 + 200115 1.05 0.00312
Target:  5'- aACGAGCGGGCACAGGCGGACGGCGUUg -3'
miRNA:   3'- -UGCUCGCCCGUGUCCGCCUGCCGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.