miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10359 3' -55 NC_002687.1 + 226811 0.65 0.989442
Target:  5'- gCCGGuGGCGGugGCGGugGCGGUg--- -3'
miRNA:   3'- -GGUC-CCGCUugCGCUgaCGUCGaaua -5'
10359 3' -55 NC_002687.1 + 276727 0.66 0.986605
Target:  5'- gCUGGGGCuGugGCGGCUGCGuGUc--- -3'
miRNA:   3'- -GGUCCCGcUugCGCUGACGU-CGaaua -5'
10359 3' -55 NC_002687.1 + 224169 0.66 0.986605
Target:  5'- gCGGuGGCGGugGCGGggGCAGUg--- -3'
miRNA:   3'- gGUC-CCGCUugCGCUgaCGUCGaaua -5'
10359 3' -55 NC_002687.1 + 226217 0.66 0.984984
Target:  5'- aCAGGGgGGugGCGuggGCGGCc--- -3'
miRNA:   3'- gGUCCCgCUugCGCugaCGUCGaaua -5'
10359 3' -55 NC_002687.1 + 291744 0.66 0.984984
Target:  5'- gCCcGGGCaAGCaGCGACcGCAGCa--- -3'
miRNA:   3'- -GGuCCCGcUUG-CGCUGaCGUCGaaua -5'
10359 3' -55 NC_002687.1 + 225659 0.66 0.984984
Target:  5'- aCAGGGgGGugGCGuggGCGGCc--- -3'
miRNA:   3'- gGUCCCgCUugCGCugaCGUCGaaua -5'
10359 3' -55 NC_002687.1 + 280957 0.66 0.983217
Target:  5'- gCgGGGGCcugGGugGCGGCaGCGGCg--- -3'
miRNA:   3'- -GgUCCCG---CUugCGCUGaCGUCGaaua -5'
10359 3' -55 NC_002687.1 + 332502 0.66 0.980895
Target:  5'- cCUGGGGaCGGugauccacccuuUGCGGCUGCAGCa--- -3'
miRNA:   3'- -GGUCCC-GCUu-----------GCGCUGACGUCGaaua -5'
10359 3' -55 NC_002687.1 + 145359 0.67 0.96917
Target:  5'- aCuGGGUGAACGCGAU--CGGCUa-- -3'
miRNA:   3'- gGuCCCGCUUGCGCUGacGUCGAaua -5'
10359 3' -55 NC_002687.1 + 281856 0.67 0.96917
Target:  5'- gCAGGGCGGGCGCGAggGagAGUUg-- -3'
miRNA:   3'- gGUCCCGCUUGCGCUgaCg-UCGAaua -5'
10359 3' -55 NC_002687.1 + 324099 0.68 0.966193
Target:  5'- aCAGcaGGCGAACuCGACUccaGCAGCUa-- -3'
miRNA:   3'- gGUC--CCGCUUGcGCUGA---CGUCGAaua -5'
10359 3' -55 NC_002687.1 + 324483 0.68 0.966193
Target:  5'- aCAGcaGGCGAACuCGACUccaGCAGCUa-- -3'
miRNA:   3'- gGUC--CCGCUUGcGCUGA---CGUCGAaua -5'
10359 3' -55 NC_002687.1 + 324866 0.68 0.966193
Target:  5'- aCAGcaGGCGAACuCGACUccaGCAGCUa-- -3'
miRNA:   3'- gGUC--CCGCUUGcGCUGA---CGUCGAaua -5'
10359 3' -55 NC_002687.1 + 325250 0.68 0.966193
Target:  5'- aCAGcaGGCGAACuCGACUccaGCAGCUa-- -3'
miRNA:   3'- gGUC--CCGCUUGcGCUGA---CGUCGAaua -5'
10359 3' -55 NC_002687.1 + 224446 0.68 0.963019
Target:  5'- -uGGuGGUGGugGCGGCgGCAGCg--- -3'
miRNA:   3'- ggUC-CCGCUugCGCUGaCGUCGaaua -5'
10359 3' -55 NC_002687.1 + 325617 0.68 0.956061
Target:  5'- aCAGaGGCGGACuuGACUccaGCAGCUa-- -3'
miRNA:   3'- gGUC-CCGCUUGcgCUGA---CGUCGAaua -5'
10359 3' -55 NC_002687.1 + 10396 0.68 0.952269
Target:  5'- -aAGGcaGCGGACGCGACcgugguUGCAGCa--- -3'
miRNA:   3'- ggUCC--CGCUUGCGCUG------ACGUCGaaua -5'
10359 3' -55 NC_002687.1 + 332245 0.69 0.94404
Target:  5'- -uGGGcGUGGAgGCGAUUGCGGCa--- -3'
miRNA:   3'- ggUCC-CGCUUgCGCUGACGUCGaaua -5'
10359 3' -55 NC_002687.1 + 314390 0.69 0.94404
Target:  5'- uCCucGGcCGAACGCGgccGCUGUAGCUUu- -3'
miRNA:   3'- -GGucCC-GCUUGCGC---UGACGUCGAAua -5'
10359 3' -55 NC_002687.1 + 159711 0.69 0.934936
Target:  5'- -gAGGGcCGAGCacaGCGcCUGCAGCUg-- -3'
miRNA:   3'- ggUCCC-GCUUG---CGCuGACGUCGAaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.