miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10359 5' -49.5 NC_002687.1 + 84979 0.67 0.999726
Target:  5'- gGAUGGacguucGCGCCGuGcGCGCUCAUCGCc -3'
miRNA:   3'- aUUAUU------UGUGGU-CaCGCGAGUGGUGc -5'
10359 5' -49.5 NC_002687.1 + 13323 0.67 0.999726
Target:  5'- aGGUGuGCAUCuGUGCacaUCACCACGu -3'
miRNA:   3'- aUUAUuUGUGGuCACGcg-AGUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 55921 0.67 0.999726
Target:  5'- cUGGUAcGGCACCGGUGUaaUCACCuCGu -3'
miRNA:   3'- -AUUAU-UUGUGGUCACGcgAGUGGuGC- -5'
10359 5' -49.5 NC_002687.1 + 233546 0.67 0.9997
Target:  5'- ---gAGACACCAGggauuugaguuucGCGCUugauucuucggcCACCACGu -3'
miRNA:   3'- auuaUUUGUGGUCa------------CGCGA------------GUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 194466 0.67 0.999657
Target:  5'- ----uGACAgCAGUGCGCUCAgCu-- -3'
miRNA:   3'- auuauUUGUgGUCACGCGAGUgGugc -5'
10359 5' -49.5 NC_002687.1 + 314689 0.67 0.999572
Target:  5'- ---cAGAUGCCAGUGuCGC-CGCCAa- -3'
miRNA:   3'- auuaUUUGUGGUCAC-GCGaGUGGUgc -5'
10359 5' -49.5 NC_002687.1 + 209247 0.67 0.999572
Target:  5'- aGAUGAACGacaaCAaUGgGCUCugCACGa -3'
miRNA:   3'- aUUAUUUGUg---GUcACgCGAGugGUGC- -5'
10359 5' -49.5 NC_002687.1 + 51876 0.67 0.99947
Target:  5'- aAGUGAGCGCC-GUG-GCUCAaguCCAUGu -3'
miRNA:   3'- aUUAUUUGUGGuCACgCGAGU---GGUGC- -5'
10359 5' -49.5 NC_002687.1 + 50005 0.67 0.99947
Target:  5'- aAGUGAGCGCC-GUG-GCUCAaguCCAUGu -3'
miRNA:   3'- aUUAUUUGUGGuCACgCGAGU---GGUGC- -5'
10359 5' -49.5 NC_002687.1 + 209422 0.68 0.999348
Target:  5'- -cGUAuuccuCugCGGUGCGCUUguuGCCACu -3'
miRNA:   3'- auUAUuu---GugGUCACGCGAG---UGGUGc -5'
10359 5' -49.5 NC_002687.1 + 68043 0.68 0.999201
Target:  5'- cGGUGAcgGCACCGG-GUGC-CACCAUc -3'
miRNA:   3'- aUUAUU--UGUGGUCaCGCGaGUGGUGc -5'
10359 5' -49.5 NC_002687.1 + 298354 0.68 0.999027
Target:  5'- gAAUGGGCGCCu-UGCGUgUGCCGCGa -3'
miRNA:   3'- aUUAUUUGUGGucACGCGaGUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 291350 0.68 0.999027
Target:  5'- -----cGCGCCGGUGUGCgcgCGCCuuGu -3'
miRNA:   3'- auuauuUGUGGUCACGCGa--GUGGugC- -5'
10359 5' -49.5 NC_002687.1 + 263327 0.68 0.998822
Target:  5'- ---aAGGCACCAGU-CGC-CACCAUc -3'
miRNA:   3'- auuaUUUGUGGUCAcGCGaGUGGUGc -5'
10359 5' -49.5 NC_002687.1 + 301027 0.68 0.998581
Target:  5'- aGAUGAACGCCAGcucgGUGUaCACCuCGu -3'
miRNA:   3'- aUUAUUUGUGGUCa---CGCGaGUGGuGC- -5'
10359 5' -49.5 NC_002687.1 + 5526 0.69 0.997972
Target:  5'- ---gGGACgACCAGcgGCGCUCagACCGCu -3'
miRNA:   3'- auuaUUUG-UGGUCa-CGCGAG--UGGUGc -5'
10359 5' -49.5 NC_002687.1 + 6350 0.69 0.997972
Target:  5'- ---gGGACgACCAGcgGCGCUCagACCGCu -3'
miRNA:   3'- auuaUUUG-UGGUCa-CGCGAG--UGGUGc -5'
10359 5' -49.5 NC_002687.1 + 110688 0.69 0.997157
Target:  5'- ---cGAGgACCAGUGCGCcCGCUcCGa -3'
miRNA:   3'- auuaUUUgUGGUCACGCGaGUGGuGC- -5'
10359 5' -49.5 NC_002687.1 + 332886 0.7 0.996088
Target:  5'- ---aGAACGCCagGGUGUGCUgcaGCCGCa -3'
miRNA:   3'- auuaUUUGUGG--UCACGCGAg--UGGUGc -5'
10359 5' -49.5 NC_002687.1 + 253495 0.7 0.995441
Target:  5'- cGGUGGugACCuguGUGCGCUgACCGu- -3'
miRNA:   3'- aUUAUUugUGGu--CACGCGAgUGGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.