miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10362 5' -51.6 NC_002687.1 + 296527 0.66 0.999334
Target:  5'- cCGGccuucAAAGAUGCuCUccgcgaGCACGUCGCCa-- -3'
miRNA:   3'- -GCC-----UUUCUAUG-GA------CGUGUAGCGGcau -5'
10362 5' -51.6 NC_002687.1 + 128895 0.66 0.999188
Target:  5'- gCGGAGGcguuAUACCcGUgauCAUCGCCGUGa -3'
miRNA:   3'- -GCCUUUc---UAUGGaCGu--GUAGCGGCAU- -5'
10362 5' -51.6 NC_002687.1 + 155545 0.66 0.999188
Target:  5'- uCGGAaaccugacguucGAGGUuCCgaaugUGCACAcCGCCGUAg -3'
miRNA:   3'- -GCCU------------UUCUAuGG-----ACGUGUaGCGGCAU- -5'
10362 5' -51.6 NC_002687.1 + 176567 0.66 0.999015
Target:  5'- cCGGGcuGAU-UCaGCACGUCGUCGUGu -3'
miRNA:   3'- -GCCUuuCUAuGGaCGUGUAGCGGCAU- -5'
10362 5' -51.6 NC_002687.1 + 61494 0.67 0.998298
Target:  5'- aCGGGAcGGUaaucuugacGCCgucGCACGUCGCCa-- -3'
miRNA:   3'- -GCCUUuCUA---------UGGa--CGUGUAGCGGcau -5'
10362 5' -51.6 NC_002687.1 + 323881 0.67 0.998298
Target:  5'- aGGAGGGAcGCCU-CACcUUGCCGa- -3'
miRNA:   3'- gCCUUUCUaUGGAcGUGuAGCGGCau -5'
10362 5' -51.6 NC_002687.1 + 290175 0.67 0.998268
Target:  5'- uCGGGAAGucACCUGCaucggagauaacaACAUgCGCCGa- -3'
miRNA:   3'- -GCCUUUCuaUGGACG-------------UGUA-GCGGCau -5'
10362 5' -51.6 NC_002687.1 + 10486 0.67 0.997608
Target:  5'- aCGGGAgccGGGU-CCggugGCACAUCggguGCCGUGu -3'
miRNA:   3'- -GCCUU---UCUAuGGa---CGUGUAG----CGGCAU- -5'
10362 5' -51.6 NC_002687.1 + 164969 0.68 0.994813
Target:  5'- uGGcGAGcgccucacACCUGCugAUCGCCGg- -3'
miRNA:   3'- gCCuUUCua------UGGACGugUAGCGGCau -5'
10362 5' -51.6 NC_002687.1 + 103503 0.68 0.99313
Target:  5'- gGGGGAGAUGCUUGU-CAUCGCg--- -3'
miRNA:   3'- gCCUUUCUAUGGACGuGUAGCGgcau -5'
10362 5' -51.6 NC_002687.1 + 65569 0.69 0.989817
Target:  5'- gCGGcacauGAUGCCgUGC-CGUCGCCGg- -3'
miRNA:   3'- -GCCuuu--CUAUGG-ACGuGUAGCGGCau -5'
10362 5' -51.6 NC_002687.1 + 76991 0.7 0.981664
Target:  5'- aGGAGAGAaACgUcCACGUCGCCGc- -3'
miRNA:   3'- gCCUUUCUaUGgAcGUGUAGCGGCau -5'
10362 5' -51.6 NC_002687.1 + 169612 0.71 0.969383
Target:  5'- cCGGGGccGGAUACCUGUGC--CGCCGa- -3'
miRNA:   3'- -GCCUU--UCUAUGGACGUGuaGCGGCau -5'
10362 5' -51.6 NC_002687.1 + 182392 0.72 0.939131
Target:  5'- uGGAGAGGcACgCUGCcguCAUCGCCGa- -3'
miRNA:   3'- gCCUUUCUaUG-GACGu--GUAGCGGCau -5'
10362 5' -51.6 NC_002687.1 + 323856 0.73 0.929317
Target:  5'- -aGAGAGAUGCCgGCGCGUCGUCc-- -3'
miRNA:   3'- gcCUUUCUAUGGaCGUGUAGCGGcau -5'
10362 5' -51.6 NC_002687.1 + 254354 0.73 0.929317
Target:  5'- gCGGAGGGcgGaCUGCGCGUCgGCCGUc -3'
miRNA:   3'- -GCCUUUCuaUgGACGUGUAG-CGGCAu -5'
10362 5' -51.6 NC_002687.1 + 324392 0.74 0.900724
Target:  5'- gCGGGAAGGUuuauagACCUGUAC--CGCCGUAc -3'
miRNA:   3'- -GCCUUUCUA------UGGACGUGuaGCGGCAU- -5'
10362 5' -51.6 NC_002687.1 + 324776 0.74 0.900724
Target:  5'- gCGGGAAGGUuuauagACCUGUAC--CGCCGUAc -3'
miRNA:   3'- -GCCUUUCUA------UGGACGUGuaGCGGCAU- -5'
10362 5' -51.6 NC_002687.1 + 324009 0.74 0.900724
Target:  5'- gCGGGAAGGUuuauagACCUGUAC--CGCCGUAc -3'
miRNA:   3'- -GCCUUUCUA------UGGACGUGuaGCGGCAU- -5'
10362 5' -51.6 NC_002687.1 + 323625 0.74 0.900724
Target:  5'- gCGGGAAGGUuuauagACCUGUAC--CGCCGUAc -3'
miRNA:   3'- -GCCUUUCUA------UGGACGUGuaGCGGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.