miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10367 3' -56.2 NC_002687.1 + 263289 0.66 0.976145
Target:  5'- cGUGCuCGCAUACACCagcuGGAACgaCUGa- -3'
miRNA:   3'- uCACG-GUGUGUGUGG----CCUUGg-GACaa -5'
10367 3' -56.2 NC_002687.1 + 87355 0.66 0.973671
Target:  5'- cAGcGCCACACGC-CCGGcguuGACCCc--- -3'
miRNA:   3'- -UCaCGGUGUGUGuGGCC----UUGGGacaa -5'
10367 3' -56.2 NC_002687.1 + 296753 0.66 0.973671
Target:  5'- cGUGuCCAUcgAgGCACCGGAGUCCUGc- -3'
miRNA:   3'- uCAC-GGUG--UgUGUGGCCUUGGGACaa -5'
10367 3' -56.2 NC_002687.1 + 122450 0.66 0.971015
Target:  5'- cAGUGUCACauucGCGCACC---GCCCUGg- -3'
miRNA:   3'- -UCACGGUG----UGUGUGGccuUGGGACaa -5'
10367 3' -56.2 NC_002687.1 + 208651 0.66 0.968173
Target:  5'- uGGUGCCGagaACgACcCCaGGGACCCUGc- -3'
miRNA:   3'- -UCACGGUg--UG-UGuGG-CCUUGGGACaa -5'
10367 3' -56.2 NC_002687.1 + 253091 0.66 0.968173
Target:  5'- --cGCCGCACACGCC---GCCUUGa- -3'
miRNA:   3'- ucaCGGUGUGUGUGGccuUGGGACaa -5'
10367 3' -56.2 NC_002687.1 + 292717 0.67 0.958472
Target:  5'- cGUGCgAUACGCAUCGcgcuGAACCCUa-- -3'
miRNA:   3'- uCACGgUGUGUGUGGC----CUUGGGAcaa -5'
10367 3' -56.2 NC_002687.1 + 225258 0.67 0.954831
Target:  5'- --cGCCAcCACAugcCACCGGGGCCCc--- -3'
miRNA:   3'- ucaCGGU-GUGU---GUGGCCUUGGGacaa -5'
10367 3' -56.2 NC_002687.1 + 158722 0.67 0.954831
Target:  5'- --cGCCACcuACccuccuGCACCGGAACCCa--- -3'
miRNA:   3'- ucaCGGUG--UG------UGUGGCCUUGGGacaa -5'
10367 3' -56.2 NC_002687.1 + 201239 0.67 0.95098
Target:  5'- --aGCCACACAC-CUGGuACCCcGUc -3'
miRNA:   3'- ucaCGGUGUGUGuGGCCuUGGGaCAa -5'
10367 3' -56.2 NC_002687.1 + 271195 0.67 0.946915
Target:  5'- gGGcGCCGCGCACucuugGCCaGAGCUCUGa- -3'
miRNA:   3'- -UCaCGGUGUGUG-----UGGcCUUGGGACaa -5'
10367 3' -56.2 NC_002687.1 + 291358 0.67 0.942634
Target:  5'- -uUGCCGCcCGCGCCGGugugcgcgcGCCUUGUc -3'
miRNA:   3'- ucACGGUGuGUGUGGCCu--------UGGGACAa -5'
10367 3' -56.2 NC_002687.1 + 3148 0.68 0.932932
Target:  5'- cGGUGUCAUAgACA-CGGAugguacgGCCCUGUg -3'
miRNA:   3'- -UCACGGUGUgUGUgGCCU-------UGGGACAa -5'
10367 3' -56.2 NC_002687.1 + 247186 0.68 0.928476
Target:  5'- -cUGUCGCACACGCUGaccACCCUGa- -3'
miRNA:   3'- ucACGGUGUGUGUGGCcu-UGGGACaa -5'
10367 3' -56.2 NC_002687.1 + 318729 0.68 0.928476
Target:  5'- -cUGUCGCACACGCUGaccACCCUGa- -3'
miRNA:   3'- ucACGGUGUGUGUGGCcu-UGGGACaa -5'
10367 3' -56.2 NC_002687.1 + 133710 0.68 0.923314
Target:  5'- -aUGuUCACAC-CACCGGAGCCCg--- -3'
miRNA:   3'- ucAC-GGUGUGuGUGGCCUUGGGacaa -5'
10367 3' -56.2 NC_002687.1 + 5376 0.68 0.912328
Target:  5'- cAGUGCUACACGCGCCGcGugcaAAUCCUu-- -3'
miRNA:   3'- -UCACGGUGUGUGUGGC-C----UUGGGAcaa -5'
10367 3' -56.2 NC_002687.1 + 113060 0.69 0.908861
Target:  5'- cGUGUgaacaaACGCACGCCauucaucuguagcuuGGAACCCUGUc -3'
miRNA:   3'- uCACGg-----UGUGUGUGG---------------CCUUGGGACAa -5'
10367 3' -56.2 NC_002687.1 + 96966 0.69 0.89421
Target:  5'- gAG-GCCu---GCACCGGAGCCCUGc- -3'
miRNA:   3'- -UCaCGGugugUGUGGCCUUGGGACaa -5'
10367 3' -56.2 NC_002687.1 + 318074 0.69 0.874184
Target:  5'- --cGCCGCacaucgcaACACACCGGAACUCUu-- -3'
miRNA:   3'- ucaCGGUG--------UGUGUGGCCUUGGGAcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.