miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10367 3' -56.2 NC_002687.1 + 205550 1.05 0.010285
Target:  5'- cAGUGCCACACACACCGGAACCCUGUUc -3'
miRNA:   3'- -UCACGGUGUGUGUGGCCUUGGGACAA- -5'
10367 3' -56.2 NC_002687.1 + 137407 0.75 0.595039
Target:  5'- --aGCCugACACACUGGAACCCc--- -3'
miRNA:   3'- ucaCGGugUGUGUGGCCUUGGGacaa -5'
10367 3' -56.2 NC_002687.1 + 295521 0.73 0.702851
Target:  5'- --cGaCCGCACGCACCGGcGCCgUGUg -3'
miRNA:   3'- ucaC-GGUGUGUGUGGCCuUGGgACAa -5'
10367 3' -56.2 NC_002687.1 + 216835 0.72 0.731528
Target:  5'- --aGCCACACGCACCGGGuUCCgucGUg -3'
miRNA:   3'- ucaCGGUGUGUGUGGCCUuGGGa--CAa -5'
10367 3' -56.2 NC_002687.1 + 264054 0.72 0.740938
Target:  5'- cGGUGCCAuuCACGCACCaGGAACuCCaUGg- -3'
miRNA:   3'- -UCACGGU--GUGUGUGG-CCUUG-GG-ACaa -5'
10367 3' -56.2 NC_002687.1 + 145831 0.72 0.768609
Target:  5'- --cGCCgagGCGCGCGCCGGGGCgCUGg- -3'
miRNA:   3'- ucaCGG---UGUGUGUGGCCUUGgGACaa -5'
10367 3' -56.2 NC_002687.1 + 254288 0.71 0.812371
Target:  5'- --aGCCACGCgugACGCCGGAAUCCauUGUc -3'
miRNA:   3'- ucaCGGUGUG---UGUGGCCUUGGG--ACAa -5'
10367 3' -56.2 NC_002687.1 + 136359 0.7 0.867102
Target:  5'- aGGUGUCACAgGCGCCGGGaaagAUCC-GUUg -3'
miRNA:   3'- -UCACGGUGUgUGUGGCCU----UGGGaCAA- -5'
10367 3' -56.2 NC_002687.1 + 162955 0.7 0.867102
Target:  5'- -uUGCCG-ACGCAacaGGAACCCUGUUg -3'
miRNA:   3'- ucACGGUgUGUGUgg-CCUUGGGACAA- -5'
10367 3' -56.2 NC_002687.1 + 318074 0.69 0.874184
Target:  5'- --cGCCGCacaucgcaACACACCGGAACUCUu-- -3'
miRNA:   3'- ucaCGGUG--------UGUGUGGCCUUGGGAcaa -5'
10367 3' -56.2 NC_002687.1 + 96966 0.69 0.89421
Target:  5'- gAG-GCCu---GCACCGGAGCCCUGc- -3'
miRNA:   3'- -UCaCGGugugUGUGGCCUUGGGACaa -5'
10367 3' -56.2 NC_002687.1 + 113060 0.69 0.908861
Target:  5'- cGUGUgaacaaACGCACGCCauucaucuguagcuuGGAACCCUGUc -3'
miRNA:   3'- uCACGg-----UGUGUGUGG---------------CCUUGGGACAa -5'
10367 3' -56.2 NC_002687.1 + 5376 0.68 0.912328
Target:  5'- cAGUGCUACACGCGCCGcGugcaAAUCCUu-- -3'
miRNA:   3'- -UCACGGUGUGUGUGGC-C----UUGGGAcaa -5'
10367 3' -56.2 NC_002687.1 + 133710 0.68 0.923314
Target:  5'- -aUGuUCACAC-CACCGGAGCCCg--- -3'
miRNA:   3'- ucAC-GGUGUGuGUGGCCUUGGGacaa -5'
10367 3' -56.2 NC_002687.1 + 247186 0.68 0.928476
Target:  5'- -cUGUCGCACACGCUGaccACCCUGa- -3'
miRNA:   3'- ucACGGUGUGUGUGGCcu-UGGGACaa -5'
10367 3' -56.2 NC_002687.1 + 318729 0.68 0.928476
Target:  5'- -cUGUCGCACACGCUGaccACCCUGa- -3'
miRNA:   3'- ucACGGUGUGUGUGGCcu-UGGGACaa -5'
10367 3' -56.2 NC_002687.1 + 3148 0.68 0.932932
Target:  5'- cGGUGUCAUAgACA-CGGAugguacgGCCCUGUg -3'
miRNA:   3'- -UCACGGUGUgUGUgGCCU-------UGGGACAa -5'
10367 3' -56.2 NC_002687.1 + 291358 0.67 0.942634
Target:  5'- -uUGCCGCcCGCGCCGGugugcgcgcGCCUUGUc -3'
miRNA:   3'- ucACGGUGuGUGUGGCCu--------UGGGACAa -5'
10367 3' -56.2 NC_002687.1 + 271195 0.67 0.946915
Target:  5'- gGGcGCCGCGCACucuugGCCaGAGCUCUGa- -3'
miRNA:   3'- -UCaCGGUGUGUG-----UGGcCUUGGGACaa -5'
10367 3' -56.2 NC_002687.1 + 201239 0.67 0.95098
Target:  5'- --aGCCACACAC-CUGGuACCCcGUc -3'
miRNA:   3'- ucaCGGUGUGUGuGGCCuUGGGaCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.