Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10367 | 3' | -56.2 | NC_002687.1 | + | 136359 | 0.7 | 0.867102 |
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Target: 5'- aGGUGUCACAgGCGCCGGGaaagAUCC-GUUg -3' miRNA: 3'- -UCACGGUGUgUGUGGCCU----UGGGaCAA- -5' |
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| 10367 | 3' | -56.2 | NC_002687.1 | + | 162955 | 0.7 | 0.867102 |
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Target: 5'- -uUGCCG-ACGCAacaGGAACCCUGUUg -3' miRNA: 3'- ucACGGUgUGUGUgg-CCUUGGGACAA- -5' |
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| 10367 | 3' | -56.2 | NC_002687.1 | + | 254288 | 0.71 | 0.812371 |
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Target: 5'- --aGCCACGCgugACGCCGGAAUCCauUGUc -3' miRNA: 3'- ucaCGGUGUG---UGUGGCCUUGGG--ACAa -5' |
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| 10367 | 3' | -56.2 | NC_002687.1 | + | 145831 | 0.72 | 0.768609 |
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Target: 5'- --cGCCgagGCGCGCGCCGGGGCgCUGg- -3' miRNA: 3'- ucaCGG---UGUGUGUGGCCUUGgGACaa -5' |
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| 10367 | 3' | -56.2 | NC_002687.1 | + | 264054 | 0.72 | 0.740938 |
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Target: 5'- cGGUGCCAuuCACGCACCaGGAACuCCaUGg- -3' miRNA: 3'- -UCACGGU--GUGUGUGG-CCUUG-GG-ACaa -5' |
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| 10367 | 3' | -56.2 | NC_002687.1 | + | 216835 | 0.72 | 0.731528 |
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Target: 5'- --aGCCACACGCACCGGGuUCCgucGUg -3' miRNA: 3'- ucaCGGUGUGUGUGGCCUuGGGa--CAa -5' |
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| 10367 | 3' | -56.2 | NC_002687.1 | + | 295521 | 0.73 | 0.702851 |
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Target: 5'- --cGaCCGCACGCACCGGcGCCgUGUg -3' miRNA: 3'- ucaC-GGUGUGUGUGGCCuUGGgACAa -5' |
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| 10367 | 3' | -56.2 | NC_002687.1 | + | 137407 | 0.75 | 0.595039 |
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Target: 5'- --aGCCugACACACUGGAACCCc--- -3' miRNA: 3'- ucaCGGugUGUGUGGCCUUGGGacaa -5' |
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| 10367 | 3' | -56.2 | NC_002687.1 | + | 205550 | 1.05 | 0.010285 |
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Target: 5'- cAGUGCCACACACACCGGAACCCUGUUc -3' miRNA: 3'- -UCACGGUGUGUGUGGCCUUGGGACAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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