Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10367 | 3' | -56.2 | NC_002687.1 | + | 137407 | 0.75 | 0.595039 |
Target: 5'- --aGCCugACACACUGGAACCCc--- -3' miRNA: 3'- ucaCGGugUGUGUGGCCUUGGGacaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 136359 | 0.7 | 0.867102 |
Target: 5'- aGGUGUCACAgGCGCCGGGaaagAUCC-GUUg -3' miRNA: 3'- -UCACGGUGUgUGUGGCCU----UGGGaCAA- -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 133710 | 0.68 | 0.923314 |
Target: 5'- -aUGuUCACAC-CACCGGAGCCCg--- -3' miRNA: 3'- ucAC-GGUGUGuGUGGCCUUGGGacaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 122450 | 0.66 | 0.971015 |
Target: 5'- cAGUGUCACauucGCGCACC---GCCCUGg- -3' miRNA: 3'- -UCACGGUG----UGUGUGGccuUGGGACaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 113060 | 0.69 | 0.908861 |
Target: 5'- cGUGUgaacaaACGCACGCCauucaucuguagcuuGGAACCCUGUc -3' miRNA: 3'- uCACGg-----UGUGUGUGG---------------CCUUGGGACAa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 96966 | 0.69 | 0.89421 |
Target: 5'- gAG-GCCu---GCACCGGAGCCCUGc- -3' miRNA: 3'- -UCaCGGugugUGUGGCCUUGGGACaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 87355 | 0.66 | 0.973671 |
Target: 5'- cAGcGCCACACGC-CCGGcguuGACCCc--- -3' miRNA: 3'- -UCaCGGUGUGUGuGGCC----UUGGGacaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 5376 | 0.68 | 0.912328 |
Target: 5'- cAGUGCUACACGCGCCGcGugcaAAUCCUu-- -3' miRNA: 3'- -UCACGGUGUGUGUGGC-C----UUGGGAcaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 3148 | 0.68 | 0.932932 |
Target: 5'- cGGUGUCAUAgACA-CGGAugguacgGCCCUGUg -3' miRNA: 3'- -UCACGGUGUgUGUgGCCU-------UGGGACAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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