Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10367 | 3' | -56.2 | NC_002687.1 | + | 133710 | 0.68 | 0.923314 |
Target: 5'- -aUGuUCACAC-CACCGGAGCCCg--- -3' miRNA: 3'- ucAC-GGUGUGuGUGGCCUUGGGacaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 96966 | 0.69 | 0.89421 |
Target: 5'- gAG-GCCu---GCACCGGAGCCCUGc- -3' miRNA: 3'- -UCaCGGugugUGUGGCCUUGGGACaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 136359 | 0.7 | 0.867102 |
Target: 5'- aGGUGUCACAgGCGCCGGGaaagAUCC-GUUg -3' miRNA: 3'- -UCACGGUGUgUGUGGCCU----UGGGaCAA- -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 254288 | 0.71 | 0.812371 |
Target: 5'- --aGCCACGCgugACGCCGGAAUCCauUGUc -3' miRNA: 3'- ucaCGGUGUG---UGUGGCCUUGGG--ACAa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 253091 | 0.66 | 0.968173 |
Target: 5'- --cGCCGCACACGCC---GCCUUGa- -3' miRNA: 3'- ucaCGGUGUGUGUGGccuUGGGACaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 208651 | 0.66 | 0.968173 |
Target: 5'- uGGUGCCGagaACgACcCCaGGGACCCUGc- -3' miRNA: 3'- -UCACGGUg--UG-UGuGG-CCUUGGGACaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 5376 | 0.68 | 0.912328 |
Target: 5'- cAGUGCUACACGCGCCGcGugcaAAUCCUu-- -3' miRNA: 3'- -UCACGGUGUGUGUGGC-C----UUGGGAcaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 122450 | 0.66 | 0.971015 |
Target: 5'- cAGUGUCACauucGCGCACC---GCCCUGg- -3' miRNA: 3'- -UCACGGUG----UGUGUGGccuUGGGACaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 158722 | 0.67 | 0.954831 |
Target: 5'- --cGCCACcuACccuccuGCACCGGAACCCa--- -3' miRNA: 3'- ucaCGGUG--UG------UGUGGCCUUGGGacaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 318729 | 0.68 | 0.928476 |
Target: 5'- -cUGUCGCACACGCUGaccACCCUGa- -3' miRNA: 3'- ucACGGUGUGUGUGGCcu-UGGGACaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 201239 | 0.67 | 0.95098 |
Target: 5'- --aGCCACACAC-CUGGuACCCcGUc -3' miRNA: 3'- ucaCGGUGUGUGuGGCCuUGGGaCAa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 87355 | 0.66 | 0.973671 |
Target: 5'- cAGcGCCACACGC-CCGGcguuGACCCc--- -3' miRNA: 3'- -UCaCGGUGUGUGuGGCC----UUGGGacaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 292717 | 0.67 | 0.958472 |
Target: 5'- cGUGCgAUACGCAUCGcgcuGAACCCUa-- -3' miRNA: 3'- uCACGgUGUGUGUGGC----CUUGGGAcaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 291358 | 0.67 | 0.942634 |
Target: 5'- -uUGCCGCcCGCGCCGGugugcgcgcGCCUUGUc -3' miRNA: 3'- ucACGGUGuGUGUGGCCu--------UGGGACAa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 295521 | 0.73 | 0.702851 |
Target: 5'- --cGaCCGCACGCACCGGcGCCgUGUg -3' miRNA: 3'- ucaC-GGUGUGUGUGGCCuUGGgACAa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 216835 | 0.72 | 0.731528 |
Target: 5'- --aGCCACACGCACCGGGuUCCgucGUg -3' miRNA: 3'- ucaCGGUGUGUGUGGCCUuGGGa--CAa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 264054 | 0.72 | 0.740938 |
Target: 5'- cGGUGCCAuuCACGCACCaGGAACuCCaUGg- -3' miRNA: 3'- -UCACGGU--GUGUGUGG-CCUUG-GG-ACaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 145831 | 0.72 | 0.768609 |
Target: 5'- --cGCCgagGCGCGCGCCGGGGCgCUGg- -3' miRNA: 3'- ucaCGG---UGUGUGUGGCCUUGgGACaa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 3148 | 0.68 | 0.932932 |
Target: 5'- cGGUGUCAUAgACA-CGGAugguacgGCCCUGUg -3' miRNA: 3'- -UCACGGUGUgUGUgGCCU-------UGGGACAa -5' |
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10367 | 3' | -56.2 | NC_002687.1 | + | 318074 | 0.69 | 0.874184 |
Target: 5'- --cGCCGCacaucgcaACACACCGGAACUCUu-- -3' miRNA: 3'- ucaCGGUG--------UGUGUGGCCUUGGGAcaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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